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MaeR D54A mutant response regulator bound to sulfate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5LWK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 294 1M lithium sulfate
0.5M ammonium sulfate
0.1M sodium citrate
Crystal Properties Matthews coefficient Solvent content 3.93 68.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.638 α = 90 b = 76.638 β = 90 c = 149.261 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2012-04-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.97627 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 68.176 99.2 0.061 0.074 0.041 11.2 3.1 7772 7772
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.27 99.1 0.54 0.54 0.659 0.373 1.4 3 1119
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5LWK 3.1 68.18 7157 605 99.16 0.2297 0.2253 0.2851 0.2651 RANDOM 116.774
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 8.52 8.52 -17.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.804 r_dihedral_angle_3_deg 20.402 r_dihedral_angle_4_deg 12.247 r_dihedral_angle_1_deg 6.011 r_mcangle_it 4.577 r_mcbond_it 2.585 r_scbond_it 2.32 r_angle_refined_deg 1.291 r_chiral_restr 0.079 r_bond_refined_d 0.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.804 r_dihedral_angle_3_deg 20.402 r_dihedral_angle_4_deg 12.247 r_dihedral_angle_1_deg 6.011 r_mcangle_it 4.577 r_mcbond_it 2.585 r_scbond_it 2.32 r_angle_refined_deg 1.291 r_chiral_restr 0.079 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1958 Nucleic Acid Atoms Solvent Atoms 8 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction PHASER phasing XDS data reduction