5LVF | pdb_00005lvf

Solution structure of Rtt103 CTD-interacting domain bound to a Thr4 phosphorylated CTD peptide

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D 1H-15N NOESY	1 mM [U-13C; U-15N] Rtt103 CID, 1.2 mM pThr4-CTD	90% H2O/10% D2O	100 mM	6.8	760 mmHg	293	Bruker AVANCE III 950
2	3D 1H-13C NOESY	1 mM [U-13C; U-15N] Rtt103 CID, 1.2 mM pThr4-CTD	90% H2O/10% D2O	100 mM	6.8	760 mmHg	293	Bruker AVANCE III 950
3	3D 1H-13C NOESY aromatic	1 mM [U-13C; U-15N] Rtt103 CID, 1.2 mM pThr4-CTD	90% H2O/10% D2O	100 mM	6.8	760 mmHg	293	Bruker AVANCE III 700
4	4D HCCH TOCSY	1 mM [U-13C; U-15N] Rtt103 CID, 1.2 mM pThr4-CTD	90% H2O/10% D2O	100 mM	6.8	760 mmHg	293	Bruker AVANCE III 700
5	3D HNCA	1 mM [U-13C; U-15N] Rtt103 CID, 1.2 mM pThr4-CTD	90% H2O/10% D2O	100 mM	6.8	760 mmHg	293	Bruker AVANCE III 700
6	F1-13C/15N-filtered NOESY-[13C,1H]-HSQC	1 mM [U-13C; U-15N] Rtt103 CID, 1.2 mM pThr4-CTD	90% H2O/10% D2O	100 mM	6.8	760 mmHg	293	Bruker AVANCE III 950

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	950
3	Bruker	AVANCE III	700

NMR Refinement
Method	Details	Software
molecular dynamics		Amber

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	50
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	Sparky		Goddard
2	structure calculation	CYANA	3.97	Guntert, Mumenthaler and Wuthrich
3	collection	TopSpin		Bruker Biospin
4	peak picking	Sparky		Goddard
5	refinement	Amber	16	Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
6	processing	TopSpin		Bruker Biospin