☰ Navigation Tabs
human catechol O-methyltransferase in complex with SAM and DNC at 1.50A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other inhouse model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 295 AMMONIUM SULPHATE, CHES, PH 9
Crystal Properties Matthews coefficient Solvent content 2.12 42.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.021 α = 90 b = 61.311 β = 118.3 c = 44.773 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.999900 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 37.88 97.6 0.092 0.109 0.997 8.53 3.47 32181 -3 21.029
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.54 80.3 0.674 0.863 0.597 1.26
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT inhouse model 1.5 37.88 28358 1512 90.3 0.1694 0.1673 0.1661 0.2096 0.2078 RANDOM 12.995
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.47 0.88 -0.04 1.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.936 r_dihedral_angle_4_deg 19.715 r_dihedral_angle_3_deg 13.254 r_dihedral_angle_1_deg 5.564 r_scangle_it 4.263 r_scbond_it 2.683 r_mcangle_it 1.681 r_angle_refined_deg 1.653 r_angle_other_deg 0.99 r_mcbond_it 0.984
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.936 r_dihedral_angle_4_deg 19.715 r_dihedral_angle_3_deg 13.254 r_dihedral_angle_1_deg 5.564 r_scangle_it 4.263 r_scbond_it 2.683 r_mcangle_it 1.681 r_angle_refined_deg 1.653 r_angle_other_deg 0.99 r_mcbond_it 0.984 r_mcbond_other 0.307 r_chiral_restr 0.103 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1670 Nucleic Acid Atoms Solvent Atoms 250 Heterogen Atoms 43
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing