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Humanized Archaeal ferritin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1S3Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 22% Polyacrylic acid
Tris pH 7.4
0.2 M MgCl2
Crystal Properties Matthews coefficient Solvent content 3.17 61.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 185.797 α = 90 b = 190.65 β = 90 c = 176.537 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2016-05-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.87292 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.93 50 96 0.133 7.8 4.2 59926
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.93 3 96 0.689 1.8 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1S3Q 2.93 49.69 56823 3071 89.01 0.2784 0.2771 0.2898 0.3019 0.3217 RANDOM 70.446
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 28.25 -19.7 -8.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.896 r_dihedral_angle_3_deg 17.93 r_dihedral_angle_4_deg 15.234 r_dihedral_angle_1_deg 5.385 r_mcangle_it 4.577 r_mcbond_it 2.765 r_mcbond_other 2.765 r_angle_refined_deg 0.998 r_angle_other_deg 0.719 r_chiral_restr 0.053
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.896 r_dihedral_angle_3_deg 17.93 r_dihedral_angle_4_deg 15.234 r_dihedral_angle_1_deg 5.385 r_mcangle_it 4.577 r_mcbond_it 2.765 r_mcbond_other 2.765 r_angle_refined_deg 0.998 r_angle_other_deg 0.719 r_chiral_restr 0.053 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16335 Nucleic Acid Atoms Solvent Atoms 13 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling Coot model building MOLREP phasing