X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.25295.150.05M sodium citrate, 35% (v/v) Peg 400, 0.07 M potassium chloride
Crystal Properties
Matthews coefficientSolvent content
2.856.09

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 90.63α = 90
b = 90.63β = 90
c = 104.4γ = 120
Symmetry
Space GroupP 63

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2014-06-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-11.06733ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.139.2499.50.0629.8913.528313
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.175

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.139.2426883142999.510.194970.193450.22241RANDOM42.064
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.55-0.27-0.551.78
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.933
r_dihedral_angle_4_deg14.652
r_dihedral_angle_3_deg12.996
r_dihedral_angle_1_deg6.306
r_long_range_B_refined5.313
r_long_range_B_other5.313
r_scangle_other2.943
r_mcangle_it2.13
r_mcangle_other2.13
r_scbond_it1.856
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.933
r_dihedral_angle_4_deg14.652
r_dihedral_angle_3_deg12.996
r_dihedral_angle_1_deg6.306
r_long_range_B_refined5.313
r_long_range_B_other5.313
r_scangle_other2.943
r_mcangle_it2.13
r_mcangle_other2.13
r_scbond_it1.856
r_scbond_other1.855
r_mcbond_it1.401
r_mcbond_other1.401
r_angle_refined_deg1.397
r_angle_other_deg0.697
r_chiral_restr0.085
r_bond_refined_d0.01
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3081
Nucleic Acid Atoms
Solvent Atoms127
Heterogen Atoms49

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
SCALAdata scaling
PHASERphasing