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Crystal Structures of MOMP from Campylobacter jejuni
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5LDV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 295.15 0.05M calcium chloride, 0.05M barium chloride, 0.1M Tris pH 7.5, 30% (v/v) PEG 400
Crystal Properties Matthews coefficient Solvent content 3.06 59.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.36 α = 90 b = 99.33 β = 90 c = 172.14 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ 2014-09-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.88 47.72 99.84 0.14 12.9 7.3 36693
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.88 2.9 99.4 0.7 3 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5LDV 2.88 47.72 35440 1865 99.84 0.23931 0.23764 0.2397 0.27192 0.2737 RANDOM 48.122
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.65 -3.31 3.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.074 r_dihedral_angle_3_deg 15.661 r_dihedral_angle_4_deg 12.601 r_dihedral_angle_1_deg 7.519 r_long_range_B_refined 2.612 r_long_range_B_other 2.612 r_angle_refined_deg 1.607 r_angle_other_deg 1.181 r_mcangle_it 0.896 r_mcangle_other 0.896
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.074 r_dihedral_angle_3_deg 15.661 r_dihedral_angle_4_deg 12.601 r_dihedral_angle_1_deg 7.519 r_long_range_B_refined 2.612 r_long_range_B_other 2.612 r_angle_refined_deg 1.607 r_angle_other_deg 1.181 r_mcangle_it 0.896 r_mcangle_other 0.896 r_scangle_other 0.862 r_scbond_it 0.657 r_scbond_other 0.656 r_mcbond_it 0.594 r_mcbond_other 0.594 r_chiral_restr 0.091 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.006 r_gen_planes_other 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9270 Nucleic Acid Atoms Solvent Atoms 13 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement xia2 data reduction SCALA data scaling PHASER phasing