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Novel Spiro[3H-indole-3,2 -pyrrolidin]-2(1H)-one Inhibitors of the MDM2-p53 Interaction: HDM2 (MDM2) in complex with compound 6b
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 277 RESERVOIR SOLUTION : NULL
Crystal Properties Matthews coefficient Solvent content 2.3 46.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.651 α = 90 b = 56.651 β = 90 c = 104.085 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-02-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.00003 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 49.06 100 0.043 40.83 22.9 10925
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.73 1.98 100 0.428 23.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT NONE 1.73 49.06 9857 1065 99.99 0.2445 0.2415 0.2847 0.2733 0.3136 RANDOM 17.91
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.03 -0.51 -1.03 1.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.274 r_dihedral_angle_3_deg 13.992 r_dihedral_angle_1_deg 5.677 r_scangle_it 5.236 r_dihedral_angle_4_deg 5.208 r_scbond_it 3.589 r_mcangle_it 2.547 r_mcbond_it 1.819 r_angle_refined_deg 1.245 r_angle_other_deg 1.028
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.274 r_dihedral_angle_3_deg 13.992 r_dihedral_angle_1_deg 5.677 r_scangle_it 5.236 r_dihedral_angle_4_deg 5.208 r_scbond_it 3.589 r_mcangle_it 2.547 r_mcbond_it 1.819 r_angle_refined_deg 1.245 r_angle_other_deg 1.028 r_mcbond_other 0.455 r_chiral_restr 0.061 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 765 Nucleic Acid Atoms Solvent Atoms 32 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling REFMAC phasing