5LAO
S-nitrosylated 3D NMR structure of the cytoplasmic rhodanese domain of the inner membrane protein YgaP from Escherichia coli
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | NOESY | 1 mM [U-99% 13C; U-99% 15N] S-nitrosylated rhodanese domain | 95% H2O/5% D2O | 0 mM | 7 | AMBIENT Pa | 303.15 | Bruker AVANCE III 700 |
2 | 3D HCCH-TOCSY | 1 mM [U-99% 13C; U-99% 15N] S-nitrosylated rhodanese domain | 95% H2O/5% D2O | 0 mM | 7 | AMBIENT Pa | 303.15 | Bruker AVANCE III 700 |
3 | 3D 1H-15N TOCSY | 1 mM [U-99% 13C; U-99% 15N] S-nitrosylated rhodanese domain | 95% H2O/5% D2O | 0 mM | 7 | AMBIENT Pa | 303.15 | Bruker AVANCE III 700 |
4 | 3D HNCACB | 1 mM [U-99% 13C; U-99% 15N] S-nitrosylated rhodanese domain | 95% H2O/5% D2O | 0 mM | 7 | AMBIENT Pa | 303.15 | Bruker AVANCE III 700 |
5 | 3D HN(CO)CA | 1 mM [U-99% 13C; U-99% 15N] S-nitrosylated rhodanese domain | 95% H2O/5% D2O | 0 mM | 7 | AMBIENT Pa | 303.15 | Bruker AVANCE III 700 |
6 | 2D TROSY | 1 mM [U-99% 13C; U-99% 15N] S-nitrosylated rhodanese domain | 95% H2O/5% D2O | 0 mM | 7 | AMBIENT Pa | 303.15 | Bruker AVANCE III 700 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 700 |
NMR Refinement | ||
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Method | Details | Software |
energy minimization | OPAL |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | OPAL | 3.97 | Luginbuhl, Guntert, Billeter and Wuthrich |
2 | structure calculation | CYANA | 3.97 | Guntert, Mumenthaler and Wuthrich |
3 | chemical shift assignment | XEASY | Bartels et al. |