X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1Q8G1Q8G, 3S95
experimental modelPDB 3S951Q8G, 3S95

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP27735% pentaerythritol propoxylate 5/4, 0.1 M HEPES pH 7.5, 0.2 M potassium chloride
Crystal Properties
Matthews coefficientSolvent content
4.0969.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 80.679α = 90
b = 80.679β = 90
c = 237.59γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2016-04-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I020.97949DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.5334.941000.06119.112.230888

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1Q8G, 3S952.5334.9429335148999.930.228890.226140.28395RANDOM88.725
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.191.593.19-10.34
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.254
r_dihedral_angle_4_deg18.569
r_dihedral_angle_3_deg18.16
r_long_range_B_other13.444
r_long_range_B_refined13.435
r_scangle_other11.168
r_mcangle_it10.571
r_mcangle_other10.569
r_scbond_it8.393
r_scbond_other8.384
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.254
r_dihedral_angle_4_deg18.569
r_dihedral_angle_3_deg18.16
r_long_range_B_other13.444
r_long_range_B_refined13.435
r_scangle_other11.168
r_mcangle_it10.571
r_mcangle_other10.569
r_scbond_it8.393
r_scbond_other8.384
r_dihedral_angle_1_deg7.933
r_mcbond_it7.576
r_mcbond_other7.567
r_angle_refined_deg1.846
r_angle_other_deg1.076
r_chiral_restr0.099
r_bond_refined_d0.015
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3367
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms31

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
Aimlessdata scaling
PHASERphasing