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Crystal structure of FimH lectin domain in complex with 4-Fluoro-Heptylmannoside
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4XO8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 285 0.2 M (NH4)2SO4, 0.1 M Hepes pH 7 and 25-30% PEG3350
Crystal Properties Matthews coefficient Solvent content 3.09 60.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.23 α = 90 b = 68.66 β = 90 c = 96.17 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.00001 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 55.88 98.46 0.172 0.997 9.2 6 33190 23.36
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2.01 94.7 0.83 2 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4XO8 1.9 55.88 33190 1604 98.46 0.1944 0.1925 0.1993 0.2294 0.2308 RANDOM 27.93
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -6.543 1.0705 5.4724
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 14.68 t_omega_torsion 4.32 t_angle_deg 1.11 t_bond_d 0.009 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 14.68 t_omega_torsion 4.32 t_angle_deg 1.11 t_bond_d 0.009 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2407 Nucleic Acid Atoms Solvent Atoms 561 Heterogen Atoms 38
Software Software Software Name Purpose BUSTER refinement XDS data reduction XSCALE data scaling PHASER phasing