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Crystal Structure of a human FasL mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4MSV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 290 0.2M Ammonium Sulfate, 0.1M Bis-Tris:HCl, pH6.5, 20% (W/V) PEG3350, 0.01M Zinc Chloride
Crystal Properties Matthews coefficient Solvent content 2.01 38.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.69 α = 90 b = 52.69 β = 90 c = 87.385 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD RAYONIX MX225HE 2016-02-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97931 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.4 0.19 13.3 9.4 9993
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 99.4 0.942 0.834 3.1 8.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4MSV 2 50 9414 521 99.21 0.16775 0.16512 0.17 0.21602 0.2221 RANDOM 25.706
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.95 -0.48 -0.95 3.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.002 r_dihedral_angle_3_deg 15.198 r_dihedral_angle_4_deg 8.23 r_long_range_B_refined 8.19 r_long_range_B_other 8.113 r_dihedral_angle_1_deg 7.341 r_scangle_other 6.291 r_mcangle_it 4.278 r_mcangle_other 4.276 r_scbond_it 3.953
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.002 r_dihedral_angle_3_deg 15.198 r_dihedral_angle_4_deg 8.23 r_long_range_B_refined 8.19 r_long_range_B_other 8.113 r_dihedral_angle_1_deg 7.341 r_scangle_other 6.291 r_mcangle_it 4.278 r_mcangle_other 4.276 r_scbond_it 3.953 r_scbond_other 3.921 r_mcbond_it 2.685 r_mcbond_other 2.678 r_angle_refined_deg 1.999 r_angle_other_deg 1.111 r_chiral_restr 0.128 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.006 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1176 Nucleic Acid Atoms Solvent Atoms 61 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction HKL-3000 data scaling MOLREP phasing