☰ Navigation Tabs
Notch1 transmembrane and associated juxtamembrane segment
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 350 uM [U-99% 15N] Notch1, 150 mg/mL DHPC/DMPC bicelle, 1 mM EDTA, 65 mM imidazole, 2 mM DTT 90% H2O/10% D2O 65 mM imidazole mM 5.5 1 atm 318 Bruker AVANCE III 900 2 3D C(CO)NH 500 uM [U-99% 13C; U-99% 15N] Notch1, 150 mg/mL DHPC/DMPC, 1 mM EDTA, 65 mM imidazole, 2 mM DTT 90% H2O/10% D2O 65 mM imidazole mM 5.5 1 atm 318 Bruker AVANCE III 600 3 3D H(CCO)NH 500 uM [U-99% 13C; U-99% 15N] Notch1, 150 mg/mL DHPC/DMPC, 1 mM EDTA, 65 mM imidazole, 2 mM DTT 90% H2O/10% D2O 65 mM imidazole mM 5.5 1 atm 318 Bruker AVANCE III 600 4 3D HCCH-TOCSY 500 uM [U-99% 13C; U-99% 15N] Notch1, 150 mg/mL DHPC/DMPC bicelle 100% D2O 65 mM imidazole mM 5.5 1 atm 318 Bruker AVANCE III 600 5 3D 1H-15N NOESY 350 uM [U-99% 15N] Notch1, 150 mg/mL DHPC/DMPC bicelle, 1 mM EDTA, 65 mM imidazole, 2 mM DTT 90% H2O/10% D2O 65 mM imidazole mM 5.5 1 atm 318 Bruker AVANCE III 900
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 900 2 Bruker AVANCE III 600
NMR Refinement Method Details Software simulated annealing X-PLOR
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 2000 Conformers Submitted Total Number 10 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment Sparky Goddard 2 chemical shift calculation TALOS Cornilescu, Delaglio and Bax 3 refinement X-PLOR Brunger 4 peak picking Sparky Goddard