5KQC | pdb_00005kqc

Identification and structural characterization of LytU

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.5 mM [U-13C; U-15N] LytU, 20 mM bisTris buffer, 1.25 mM zinc chloride	93% H2O/7% D2O		6.5	ambient atm	308	Varian INOVA 800
2	2D 1H-13C HSQC aliphatic	0.5 mM [U-13C; U-15N] LytU, 20 mM bisTris buffer, 1.25 mM zinc chloride	93% H2O/7% D2O		6.5	ambient atm	308	Varian INOVA 800
3	2D 1H-13C HSQC aromatic	0.5 mM [U-13C; U-15N] LytU, 20 mM bisTris buffer, 1.25 mM zinc chloride	93% H2O/7% D2O		6.5	ambient atm	308	Varian INOVA 800
4	3D HNCACB	0.5 mM [U-13C; U-15N] LytU, 20 mM bisTris buffer, 1.25 mM zinc chloride	93% H2O/7% D2O		6.5	ambient atm	308	Varian INOVA 800
5	3D HN(COCA)CB	0.5 mM [U-13C; U-15N] LytU, 20 mM bisTris buffer, 1.25 mM zinc chloride	93% H2O/7% D2O		6.5	ambient atm	308	Varian INOVA 800
9	3D C(CO)NH	0.5 mM [U-13C; U-15N] LytU, 20 mM bisTris buffer, 1.25 mM zinc chloride	93% H2O/7% D2O		6.5	ambient atm	308	Varian INOVA 800
8	3D H(CCO)NH	0.5 mM [U-13C; U-15N] LytU, 20 mM bisTris buffer, 1.25 mM zinc chloride	93% H2O/7% D2O		6.5	ambient atm	308	Varian INOVA 800
7	3D HCCH-COSY	0.5 mM [U-13C; U-15N] LytU, 20 mM bisTris buffer, 1.25 mM zinc chloride	93% H2O/7% D2O		6.5	ambient atm	308	Varian INOVA 800
6	2D (HB)CB(CGCD)HD	0.5 mM [U-13C; U-15N] LytU, 20 mM bisTris buffer, 1.25 mM zinc chloride	93% H2O/7% D2O		6.5	ambient atm	308	Varian INOVA 800
10	2D (HB)CB(CGCDCE)HE	0.5 mM [U-13C; U-15N] LytU, 20 mM bisTris buffer, 1.25 mM zinc chloride	93% H2O/7% D2O		6.5	ambient atm	308	Varian INOVA 800
12	3D 1H-15N NOESY	0.5 mM [U-13C; U-15N] LytU, 20 mM bisTris buffer, 1.25 mM zinc chloride	93% H2O/7% D2O		6.5	ambient atm	308	Varian INOVA 800
11	3D 1H-13C NOESY	0.5 mM [U-13C; U-15N] LytU, 20 mM bisTris buffer, 1.25 mM zinc chloride	93% H2O/7% D2O		6.5	ambient atm	308	Varian INOVA 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	800

NMR Refinement
Method	Details	Software
simulated annealing		Amber

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	300
Conformers Submitted Total Number	15
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	VnmrJ		Varian
2	chemical shift assignment	Sparky		Goddard
3	structure calculation	CYANA		Guntert, Mumenthaler and Wuthrich
4	refinement	Amber		Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman