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Anticancer activity of Ru- and Os(arene) compounds of a maleimide-functionalized bioactive pyridinecarbothioamide ligand
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4NHI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.7 294 100mg/mL hen egg white lysozyme, 0.8 M NaCl, 0.1 M sodium acetate pH 4.7
Crystal Properties Matthews coefficient Solvent content 2.02 39.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.58 α = 90 b = 78.58 β = 90 c = 37.48 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 55.565 99.7 0.055 0.059 0.02 0.999 19 9 37155
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 100 0.522 0.555 0.183 0.911 9 1823
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4NHI 1.2 55.56 35303 1801 99.55 0.168 0.1665 0.1736 0.1964 0.2029 RANDOM 15.464
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 0.19 -0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.884 r_sphericity_free 21.95 r_dihedral_angle_4_deg 18.923 r_dihedral_angle_3_deg 11.556 r_sphericity_bonded 7.819 r_dihedral_angle_1_deg 6.018 r_mcangle_it 1.527 r_angle_refined_deg 1.402 r_rigid_bond_restr 1.087 r_mcbond_it 1.082
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.884 r_sphericity_free 21.95 r_dihedral_angle_4_deg 18.923 r_dihedral_angle_3_deg 11.556 r_sphericity_bonded 7.819 r_dihedral_angle_1_deg 6.018 r_mcangle_it 1.527 r_angle_refined_deg 1.402 r_rigid_bond_restr 1.087 r_mcbond_it 1.082 r_mcbond_other 1.079 r_angle_other_deg 1.008 r_chiral_restr 0.091 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 93 Heterogen Atoms 2
Software Software Software Name Purpose MOSFLM data reduction Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction