5KES
Solution structure of the yeast Ddi1 HDD domain
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N het NOE | 0.5 mM [U-15N] Ddi1 86-196 | 90% H2O/10% D2O | 110 mM | 6.5 | 1 atm | 303 | Bruker AVANCE 600 |
2 | 2D 1H-15N HSQC-IPAP | 0.5 mM [U-15N] Ddi1 86-196 | 90% H2O/10% D2O | 110 mM | 6.5 | 1 atm | 303 | Bruker AVANCE 600 |
3 | 2D 1H-15N HSQC-IPAP | 0.5 mM [U-15N] Ddi1 86-196 | 90% H2O/10% D2O | 110 mM | 6.5 | 1 atm | 303 | Bruker AVANCE 600 |
4 | 3D CBCA(CO)NH | 0.5 mM [U-13C; U-15N] Ddi1 86-196 | 90% H2O/10% D2O | 110 mM | 6.5 | 1 atm | 303 | Bruker AVANCE 600 |
5 | 3D HNCACB | 0.5 mM [U-13C; U-15N] Ddi1 86-196 | 90% H2O/10% D2O | 110 mM | 6.5 | 1 atm | 303 | Bruker AVANCE 600 |
6 | 3D 15N/1H NOESY-HSQC | 0.5 mM [U-13C; U-15N] Ddi1 86-196 | 90% H2O/10% D2O | 110 mM | 6.5 | 1 atm | 303 | Bruker AVANCE 850 |
7 | 3D 13C/1H HSQC-NOESY | 0.5 mM [U-13C; U-15N] Ddi1 86-196 | 90% H2O/10% D2O | 110 mM | 6.5 | 1 atm | 303 | Bruker AVANCE 850 |
8 | 2D 1H-15N HSQC | 0.5 mM [U-15N] Ddi1 86-196 | 90% H2O/10% D2O | 110 mM | 6.5 | 1 atm | 303 | Bruker AVANCE 600 |
9 | 2D 1H-15N HSQC | 0.5 mM [U-13C; U-15N] Ddi1 86-196 | 90% H2O/10% D2O | 110 mM | 6.5 | 1 atm | 303 | Bruker AVANCE 850 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 850 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | XPLOR-NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure calculation | XPLOR-NIH | 2.40 | C.D. Schwieters, J.J. Kuszewski, N. Tjandra, and G.M. Clore |
6 | refinement | XPLOR-NIH | 2.40 | C.D. Schwieters, J.J. Kuszewski, N. Tjandra, and G.M. Clore |
2 | chemical shift assignment | Sparky | Goddard | |
3 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
4 | chemical shift assignment | CYANA | Guntert, Mumenthaler and Wuthrich | |
5 | data analysis | Module | M. Blackledge |