5KES | pdb_00005kes

Solution structure of the yeast Ddi1 HDD domain

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N het NOE	0.5 mM [U-15N] Ddi1 86-196	90% H2O/10% D2O	110 mM	6.5	1 atm	303	Bruker AVANCE 600
2	2D 1H-15N HSQC-IPAP	0.5 mM [U-15N] Ddi1 86-196	90% H2O/10% D2O	110 mM	6.5	1 atm	303	Bruker AVANCE 600
3	2D 1H-15N HSQC-IPAP	0.5 mM [U-15N] Ddi1 86-196	90% H2O/10% D2O	110 mM	6.5	1 atm	303	Bruker AVANCE 600
4	3D CBCA(CO)NH	0.5 mM [U-13C; U-15N] Ddi1 86-196	90% H2O/10% D2O	110 mM	6.5	1 atm	303	Bruker AVANCE 600
5	3D HNCACB	0.5 mM [U-13C; U-15N] Ddi1 86-196	90% H2O/10% D2O	110 mM	6.5	1 atm	303	Bruker AVANCE 600
6	3D 15N/1H NOESY-HSQC	0.5 mM [U-13C; U-15N] Ddi1 86-196	90% H2O/10% D2O	110 mM	6.5	1 atm	303	Bruker AVANCE 850
7	3D 13C/1H HSQC-NOESY	0.5 mM [U-13C; U-15N] Ddi1 86-196	90% H2O/10% D2O	110 mM	6.5	1 atm	303	Bruker AVANCE 850
8	2D 1H-15N HSQC	0.5 mM [U-15N] Ddi1 86-196	90% H2O/10% D2O	110 mM	6.5	1 atm	303	Bruker AVANCE 600
9	2D 1H-15N HSQC	0.5 mM [U-13C; U-15N] Ddi1 86-196	90% H2O/10% D2O	110 mM	6.5	1 atm	303	Bruker AVANCE 850

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600
2	Bruker	AVANCE	850

NMR Refinement
Method	Details	Software
simulated annealing		XPLOR-NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the least restraint violations
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (fewest violations)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure calculation	XPLOR-NIH	2.40	C.D. Schwieters, J.J. Kuszewski, N. Tjandra, and G.M. Clore
6	refinement	XPLOR-NIH	2.40	C.D. Schwieters, J.J. Kuszewski, N. Tjandra, and G.M. Clore
2	chemical shift assignment	Sparky		Goddard
3	data analysis	TALOS		Cornilescu, Delaglio and Bax
4	chemical shift assignment	CYANA		Guntert, Mumenthaler and Wuthrich
5	data analysis	Module		M. Blackledge