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PDE10a with imidazopyrazine inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.9 293 Crystals of human C-His tagged 448-759 PDE10a were grown in 0.1 M Tris-HCl pH 8.9 with ~14% w/v PEG 3350 and 5 mM CaCl2
Crystal Properties Matthews coefficient Solvent content 2.23 44.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.46 α = 90 b = 81.2 β = 90 c = 160.15 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2008-07-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 40 99.5 9.4 3.1 18304
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.7 40 17363 940 99.01 0.24075 0.23646 0.32212 0.3028 RANDOM 37.883
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.06 -3.57 0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.186 r_dihedral_angle_3_deg 16.754 r_dihedral_angle_4_deg 13.012 r_dihedral_angle_1_deg 5.572 r_angle_refined_deg 1.128 r_scangle_it 1.043 r_angle_other_deg 0.849 r_scbond_it 0.681 r_mcangle_it 0.668 r_mcbond_it 0.387
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.186 r_dihedral_angle_3_deg 16.754 r_dihedral_angle_4_deg 13.012 r_dihedral_angle_1_deg 5.572 r_angle_refined_deg 1.128 r_scangle_it 1.043 r_angle_other_deg 0.849 r_scbond_it 0.681 r_mcangle_it 0.668 r_mcbond_it 0.387 r_nbd_refined 0.227 r_symmetry_vdw_refined 0.214 r_symmetry_vdw_other 0.196 r_nbtor_refined 0.187 r_xyhbond_nbd_refined 0.181 r_nbd_other 0.175 r_metal_ion_refined 0.135 r_symmetry_hbond_refined 0.086 r_nbtor_other 0.084 r_chiral_restr 0.056 r_mcbond_other 0.05 r_xyhbond_nbd_other 0.041 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5022 Nucleic Acid Atoms Solvent Atoms 59 Heterogen Atoms 76
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling