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HDD domain from human Ddi2
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 280 uM [U-13C; U-15N] hdd 90% H2O/10% D2O 200 mM 7.4 1 atm 298 Bruker AVANCE III 600 2 3D CBCA(CO)NH 280 uM [U-13C; U-15N] hdd 90% H2O/10% D2O 200 mM 7.4 1 atm 298 Bruker AVANCE III 600 3 3D HNCACB 280 uM [U-13C; U-15N] hdd 90% H2O/10% D2O 200 mM 7.4 1 atm 298 Bruker AVANCE III 600 4 3D HNCO 280 uM [U-13C; U-15N] hdd 90% H2O/10% D2O 200 mM 7.4 1 atm 298 Bruker AVANCE III 600 5 3D HN(CA)CO 280 uM [U-13C; U-15N] hdd 90% H2O/10% D2O 200 mM 7.4 1 atm 298 Bruker AVANCE III 600 6 3D HCCH-TOCSY 280 uM [U-13C; U-15N] hdd 90% H2O/10% D2O 200 mM 7.4 1 atm 298 Bruker AVANCE III 600 8 3D 1H-15N NOESY 280 uM [U-13C; U-15N] hdd 90% H2O/10% D2O 200 mM 7.4 1 atm 298 Bruker AVANCE III 850 7 3D 1H-13C NOESY 280 uM [U-13C; U-15N] hdd 90% H2O/10% D2O 200 mM 7.4 1 atm 298 Bruker AVANCE III 850
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 850 2 Bruker AVANCE III 600
NMR Refinement Method Details Software simulated annealing YASARA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 30 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing TopSpin Bruker Biospin 5 chemical shift assignment Sparky Goddard 3 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 4 refinement YASARA Hoegenauer, Koraimann, Kungl, Vriend