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lysozyme with nano particles
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 0.1M Tris-HCl pH8.5, 1.4M Ammonium Tartrate Dibasic
Crystal Properties Matthews coefficient Solvent content 1.99 38.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.52 α = 90 b = 77.52 β = 90 c = 37.904 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2016-04-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 1.0 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 20 99.9 0.065 0.068 0.02 9.6 11.2 23263
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 99.9 0.468 0.491 0.146 0.94 11.1 1110
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.4 19.38 22002 1194 99.72 0.1393 0.1373 0.1369 0.1787 0.1777 RANDOM 17.761
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.03 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.573 r_sphericity_free 29.61 r_dihedral_angle_4_deg 24.262 r_dihedral_angle_3_deg 12.973 r_sphericity_bonded 10.436 r_dihedral_angle_1_deg 6.007 r_rigid_bond_restr 2.619 r_mcangle_it 2.472 r_mcbond_it 1.748 r_angle_refined_deg 1.684
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.573 r_sphericity_free 29.61 r_dihedral_angle_4_deg 24.262 r_dihedral_angle_3_deg 12.973 r_sphericity_bonded 10.436 r_dihedral_angle_1_deg 6.007 r_rigid_bond_restr 2.619 r_mcangle_it 2.472 r_mcbond_it 1.748 r_angle_refined_deg 1.684 r_mcbond_other 1.661 r_angle_other_deg 1.164 r_chiral_restr 0.129 r_bond_refined_d 0.018 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling MOLREP phasing PDB_EXTRACT data extraction HKL-2000 data reduction