5JZR | pdb_00005jzr

Solid-state MAS NMR structure of Acinetobacter phage 205 (AP205) coat protein in assembled capsid particles

SOLID-STATE NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D HhNH	500 mg/mL [U-100% 13C; U-100% 15N] AP205 coat protein, 15 % [U-2H] PEG, 5 mM HEPES, 50 mM sodium chloride	H2O	0.055 M	7.5	AMBIENT atm	283	Bruker AVANCE III 1000
2	3D HhCH	500 mg/mL [U-100% 13C; U-100% 15N] AP205 coat protein, 15 % [U-2H] PEG, 5 mM HEPES, 50 mM sodium chloride	H2O	0.055 M	7.5	AMBIENT atm	283	Bruker AVANCE III 1000
3	3D HCCH-TOCSY	500 mg/mL [U-100% 13C; U-100% 15N] AP205 coat protein, 15 % [U-2H] PEG, 5 mM HEPES, 50 mM sodium chloride	H2O	0.055 M	7.5	AMBIENT atm	283	Bruker AVANCE III 1000
4	3D HCCH-TOCSY	500 mg/mL [U-100% 13C; U-100% 15N] AP205 coat protein, 15 % [U-2H] PEG, 5 mM HEPES, 50 mM sodium chloride	H2O	0.055 M	7.5	AMBIENT atm	283	Bruker AVANCE III 1000
5	3D hNCAH	500 mg/mL [U-100% 13C; U-100% 15N] AP205 coat protein, 15 % [U-2H] PEG, 5 mM HEPES, 50 mM sodium chloride	H2O	0.055 M	7.5	AMBIENT atm	283	Bruker AVANCE III 1000
6	3D hNcoCAH	500 mg/mL [U-100% 13C; U-100% 15N] AP205 coat protein, 15 % [U-2H] PEG, 5 mM HEPES, 50 mM sodium chloride	H2O	0.055 M	7.5	AMBIENT atm	283	Bruker AVANCE III 1000
7	3D hCOCAH	500 mg/mL [U-100% 13C; U-100% 15N] AP205 coat protein, 15 % [U-2H] PEG, 5 mM HEPES, 50 mM sodium chloride	H2O	0.055 M	7.5	AMBIENT atm	283	Bruker AVANCE III 1000
9	3D hCOnCAH	500 mg/mL [U-100% 13C; U-100% 15N] AP205 coat protein, 15 % [U-2H] PEG, 5 mM HEPES, 50 mM sodium chloride	H2O	0.055 M	7.5	AMBIENT atm	283	Bruker AVANCE III 1000
8	3D hCANH	500 mg/mL [U-100% 13C; U-100% 15N] AP205 coat protein, 15 % [U-2H] PEG, 5 mM HEPES, 50 mM sodium chloride	H2O	0.055 M	7.5	AMBIENT atm	283	Bruker AVANCE III 1000
10	3D hcoCAcoNH	500 mg/mL [U-100% 13C; U-100% 15N] AP205 coat protein, 15 % [U-2H] PEG, 5 mM HEPES, 50 mM sodium chloride	H2O	0.055 M	7.5	AMBIENT atm	283	Bruker AVANCE III 1000

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	1000

NMR Refinement
Method	Details	Software
torsion angle dynamics		Sparky

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	Sparky		Goddard
6	chemical shift assignment	CARA	1.9	Keller and Wuthrich
2	collection	TopSpin	3.5	Bruker Biospin
3	peak picking	Sparky		Goddard
4	processing	TopSpin	3.5	Bruker Biospin
5	structure calculation	UNIO	2.6	Torsten Herrmann et al.
7	structure calculation	CYANA	3.97	Guntert, Mumenthaler and Wuthrich

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.