5JSN

Bcl2-inhibitor complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP729830% Jeffamine ED-2001, pH7.0/100 mM HEPES pH 7.0
Crystal Properties
Matthew coefficientSolvent content
2.0634.49

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 65.005α = 90
b = 65.005β = 90
c = 134.314γ = 90
Symmetry
Space GroupP 41

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRIGAKU SATURN 944+2015-11-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-D1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.132.596.60.050.050.50829.5639.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.1869.70.5281.682.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.132.5305121605990.16170.159270.20534RANDOM55.024
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
17.5617.56-35.11
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.429
r_dihedral_angle_4_deg19.549
r_dihedral_angle_3_deg18.695
r_long_range_B_refined6.602
r_long_range_B_other6.577
r_dihedral_angle_1_deg6.454
r_scangle_other4.179
r_mcangle_it3.52
r_mcangle_other3.519
r_scbond_it2.744
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.429
r_dihedral_angle_4_deg19.549
r_dihedral_angle_3_deg18.695
r_long_range_B_refined6.602
r_long_range_B_other6.577
r_dihedral_angle_1_deg6.454
r_scangle_other4.179
r_mcangle_it3.52
r_mcangle_other3.519
r_scbond_it2.744
r_scbond_other2.743
r_mcbond_it2.452
r_mcbond_other2.452
r_angle_refined_deg2.01
r_angle_other_deg1.734
r_chiral_restr0.126
r_bond_refined_d0.019
r_gen_planes_refined0.012
r_bond_other_d0.008
r_gen_planes_other0.006
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_scangle_it
r_metal_ion_refined
r_metal_ion_other
r_sphericity_bonded
r_rigid_bond_restr
r_sphericity_free
r_symmetry_vdw_refined
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4374
Nucleic Acid Atoms
Solvent Atoms152
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing