5JS7
Structural model of a apo G-protein alpha subunit determined with NMR residual dipolar couplings and SAXS
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D HNCO | 400 uM [U-98% 2H; U-99% 13C; U-99% 15N] G protein alpha subunit subtype i1, GNAI1 | 95% H2O/5% D2O | 100 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 600 |
2 | 3D HNCA | 400 uM [U-98% 2H; U-99% 13C; U-99% 15N] G protein alpha subunit subtype i1, GNAI1 | 95% H2O/5% D2O | 100 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 600 |
3 | 3D HN(CO)CA | 400 uM [U-98% 2H; U-99% 13C; U-99% 15N] G protein alpha subunit subtype i1, GNAI1 | 95% H2O/5% D2O | 100 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 600 |
5 | 3D HNCACB | 400 uM [U-98% 2H; U-99% 13C; U-99% 15N] G protein alpha subunit subtype i1, GNAI1 | 95% H2O/5% D2O | 100 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 600 |
6 | 2D 1H-15N HSQC | 250 uM [U-98% 15N; U-90% 2H] G protein alpha subunit subtype i1, GNAI1 | 95% H2O/5% D2O | 100 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 800 |
7 | 2D 1H-15N HSQC | 250 uM [U-98% 15N; U-90% 2H] G protein alpha subunit subtype i1, GNAI1 | 95% H2O/5% D2O | 100 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 800 |
8 | 3D 1H-15N NOESY | 400 uM [U-98% 2H; U-99% 13C; U-99% 15N] G protein alpha subunit subtype i1, GNAI1 | 95% H2O/5% D2O | 100 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
2 | Bruker | AVANCE III | 600 |
3 | Bruker | AVANCE III | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | Xplor-NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
5 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
6 | data analysis | Sparky | Goddard | |
7 | structure calculation | Xplor-NIH | Schwieters, Kuszewski, Tjandra and Clore | |
8 | refinement | Xplor-NIH | Schwieters, Kuszewski, Tjandra and Clore | |
3 | chemical shift assignment | Sparky | Goddard | |
4 | peak picking | Sparky | Goddard |