X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2O5GPDB entry 2O5G

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2950.1 M sodium acetate, pH 4.6, 25% w/v PEG4000
Crystal Properties
Matthews coefficientSolvent content
1.9336.13

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 29.016α = 90
b = 57.048β = 98.17
c = 45.068γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2014-11-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-F0.97872APS21-ID-F

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.725095.514.196.615660
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.72

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 2O5G1.828.721269965898.450.155150.15340.18845RANDOM25.522
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.260.18-0.24-0.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.065
r_dihedral_angle_4_deg15.705
r_dihedral_angle_3_deg10.642
r_long_range_B_refined7.066
r_long_range_B_other7.004
r_scangle_other4.481
r_mcangle_it3.257
r_mcangle_other3.257
r_dihedral_angle_1_deg3.161
r_scbond_it2.742
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.065
r_dihedral_angle_4_deg15.705
r_dihedral_angle_3_deg10.642
r_long_range_B_refined7.066
r_long_range_B_other7.004
r_scangle_other4.481
r_mcangle_it3.257
r_mcangle_other3.257
r_dihedral_angle_1_deg3.161
r_scbond_it2.742
r_scbond_other2.74
r_mcbond_it2.087
r_mcbond_other2.075
r_angle_refined_deg1.357
r_angle_other_deg0.819
r_chiral_restr0.095
r_gen_planes_refined0.022
r_gen_planes_other0.018
r_bond_refined_d0.01
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1323
Nucleic Acid Atoms
Solvent Atoms155
Heterogen Atoms4

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing