5JPL
LP2006, a handcuff-topology lasso peptide antibiotic
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 1H | 5 mM LP2006 | methanol | 1 | 7 | 1 atm | 298 | Bruker AVANCE 900 |
| 2 | 2D 1H-1H NOESY | 5 mM LP2006 | methanol | 1 | 7 | 1 atm | 298 | Bruker AVANCE 900 |
| 3 | 2D 1H-13C HSQC aliphatic | 5 mM LP2006 | methanol | 1 | 7 | 1 atm | 298 | Bruker AVANCE 900 |
| 4 | 2D 1H-13C HSQC aromatic | 5 mM LP2006 | methanol | 1 | 7 | 1 atm | 298 | Bruker AVANCE 900 |
| 5 | 2D 1H-1H TOCSY | 5 mM LP2006 | methanol | 1 | 7 | 1 atm | 298 | Bruker AVANCE 900 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 900 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | XPLOR-NIH | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | XPLOR-NIH | 2.36 | Charles Schwieters, Marius Clore (NIH) |
| 2 | collection | TopSpin | 1.3 | Bruker Biospin |
| 3 | chemical shift assignment | MestReNova | 8.1.1 | Mestrelab Research |
| 4 | peak picking | Sparky | Goddard | |
| 5 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 6 | structure calculation | XPLOR-NIH | 2.36 | Charles Schwieters, Marius Clore (NIH) |
