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vaccinia virus D4 P173G mutant /A20(1-50)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ODA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.9 293 0.1M bicine pH 8.9, 1.6M ammonium sulphate
Crystal Properties Matthews coefficient Solvent content 2.8 56.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.98 α = 90 b = 92.98 β = 90 c = 145.71 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 107 PIXEL DECTRIS PILATUS 6M 2014-02-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.978 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.49 48.61 99.5 19.7 9.5 26149
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.49 2.59 96 3.8 9.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4ODA 2.49 48.61 24806 1306 99.5 0.18562 0.18292 0.1909 0.23772 0.2411 RANDOM 54.865
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.01 -0.02 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.192 r_dihedral_angle_4_deg 17.719 r_dihedral_angle_3_deg 17.547 r_long_range_B_refined 9.854 r_long_range_B_other 9.854 r_scangle_other 7.705 r_dihedral_angle_1_deg 7.363 r_mcangle_it 6.876 r_mcangle_other 6.875 r_scbond_it 5.319
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.192 r_dihedral_angle_4_deg 17.719 r_dihedral_angle_3_deg 17.547 r_long_range_B_refined 9.854 r_long_range_B_other 9.854 r_scangle_other 7.705 r_dihedral_angle_1_deg 7.363 r_mcangle_it 6.876 r_mcangle_other 6.875 r_scbond_it 5.319 r_scbond_other 5.318 r_mcbond_it 4.919 r_mcbond_other 4.906 r_angle_refined_deg 1.989 r_angle_other_deg 1.118 r_chiral_restr 0.121 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4351 Nucleic Acid Atoms Solvent Atoms 105 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing