5J6Z | pdb_00005j6z

Structure of anastellin bound to beta-strands A and B from the third type III domain of fibronectin


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.6 mM [U-99% 13C; U-99% 15N] AB, 0.6 mM anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
22D 1H-13C HSQC aliphatic0.6 mM [U-99% 13C; U-99% 15N] AB, 0.6 mM anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
32D 1H-13C HSQC aromatic0.6 mM [U-99% 13C; U-99% 15N] AB, 0.6 mM anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
43D HNCACB0.6 mM [U-99% 13C; U-99% 15N] AB, 0.6 mM anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
53D C(CO)NH0.6 mM [U-99% 13C; U-99% 15N] AB, 0.6 mM anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
63D H(CCO)NH0.6 mM [U-99% 13C; U-99% 15N] AB, 0.6 mM anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
73D HNCO0.6 mM [U-99% 13C; U-99% 15N] AB, 0.6 mM anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
83D HN(CA)CO0.6 mM [U-99% 13C; U-99% 15N] AB, 0.6 mM anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
93D CCH-TOCSY0.6 mM [U-99% 13C; U-99% 15N] AB, 0.6 mM anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
103D HCCH-TOCSY0.6 mM [U-99% 13C; U-99% 15N] AB, 0.6 mM anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
113D 1H-13C NOESY aliphatic0.6 mM [U-99% 13C; U-99% 15N] AB, 0.6 mM anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
123D 13C/15N-filtered, 13C(aliphatic)-edited NOESY0.6 mM [U-99% 13C; U-99% 15N] AB, 0.6 mM anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
132D 13C/15N-filtered, 13C(aliphatic)-selected NOESY0.6 mM [U-99% 13C; U-99% 15N] AB, 0.6 mM anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
143D 13C/15N-filtered, 15N-edited NOESY0.6 mM [U-99% 13C; U-99% 15N] AB, 0.6 mM anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
152D 13C,15N-filtered, 15N-selected NOESY0.6 mM [U-99% 13C; U-99% 15N] AB, 0.6 mM anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
162D 1H-15N HSQC0.6 mM AB, 0.6 mM [U-99% 13C; U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
172D 1H-13C HSQC aliphatic0.6 mM AB, 0.6 mM [U-99% 13C; U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
182D 1H-13C HSQC aromatic0.6 mM AB, 0.6 mM [U-99% 13C; U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
193D HNCACB0.6 mM AB, 0.6 mM [U-99% 13C; U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
203D CBCA(CO)NH0.6 mM AB, 0.6 mM [U-99% 13C; U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
213D C(CO)NH0.6 mM AB, 0.6 mM [U-99% 13C; U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
223D H(CCO)NH0.6 mM AB, 0.6 mM [U-99% 13C; U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
233D HNCO0.6 mM AB, 0.6 mM [U-99% 13C; U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
243D HN(CA)CO0.6 mM AB, 0.6 mM [U-99% 13C; U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
253D CCH-TOCSY0.6 mM AB, 0.6 mM [U-99% 13C; U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
263D HCCH-TOCSY0.6 mM AB, 0.6 mM [U-99% 13C; U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
273D 1H-13C NOESY aliphatic0.6 mM AB, 0.6 mM [U-99% 13C; U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
283D 1H-13C NOESY aromatic0.6 mM AB, 0.6 mM [U-99% 13C; U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
292D HBCB(CGCD)HD0.6 mM AB, 0.6 mM [U-99% 13C; U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
303D 13C/15N-filtered, 13C(aliphatic)-edited NOESY0.6 mM AB, 0.6 mM [U-99% 13C; U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
312D 13C/15N-filtered, 13C(aliphatic)-selected NOESY0.6 mM AB, 0.6 mM [U-99% 13C; U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
323D 13C/15N-filtered, 13C(aromatic)-edited NOESY0.6 mM AB, 0.6 mM [U-99% 13C; U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
332D 13C/15N-filtered, 13C(aromatic)-selected NOESY0.6 mM AB, 0.6 mM [U-99% 13C; U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
343D 13C/15N-filtered, 15N-edited NOESY0.6 mM AB, 0.6 mM [U-99% 13C; U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
352D 13C/15N-filtered, 15N-selected NOESY0.6 mM AB, 0.6 mM [U-99% 13C; U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
362D 1H-15N HSQC0.6 mM [U-99% 15N] AB, 0.6 mM anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
373D 1H-15N NOESY0.6 mM [U-99% 15N] AB, 0.6 mM anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
383D 1H-15N TOCSY0.6 mM [U-99% 15N] AB, 0.6 mM anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
392D DQF-COSY0.6 mM [U-99% 15N] AB, 0.6 mM anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
402D TOCSY0.6 mM [U-99% 15N] AB, 0.6 mM anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
412D 1H-15N HSQC0.6 mM AB, 0.6 mM [U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
423D 1H-15N NOESY0.6 mM AB, 0.6 mM [U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
433D 1H-15N TOCSY0.6 mM AB, 0.6 mM [U-99% 15N] anastellin, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 140 mM sodium chloride, 2.7 mM potassium chloride90% H2O/10% D2O166 mM7.5100000 Pa298Agilent NMR system 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1AgilentNMR system600
NMR Refinement
MethodDetailsSoftware
simulated annealingrefinement in explicit waterARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number40
Conformers Submitted Total Number19
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1data analysisCcpNMRCCPN
2refinementARIALinge, O'Donoghue and Nilges
3structure calculationCNSBrunger, Adams, Clore, Gros, Nilges and Read
4structure calculationARIALinge, O'Donoghue and Nilges