5J18
Solution structure of Ras Binding Domain (RBD) of B-Raf complexed with Rigosertib (Complex I)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 200 uM [U-99% 13C; U-99% 15N] B-RAF-RBD:Rigosertib Complex I | 90% H2O/10% D2O | 200 mM | 7.4 | 1 atm | 298 | Bruker Avance 800 |
2 | 2D 1H-13C HSQC | 200 uM [U-99% 13C; U-99% 15N] B-RAF-RBD:Rigosertib Complex I | 90% H2O/10% D2O | 200 mM | 7.4 | 1 atm | 298 | Bruker Avance 800 |
3 | 3D 1H-15N NOESY | 200 uM [U-99% 13C; U-99% 15N] B-RAF-RBD:Rigosertib Complex I | 90% H2O/10% D2O | 200 mM | 7.4 | 1 atm | 298 | Bruker Avance 900 |
4 | 3D 1H-13C NOESY aliphatic | 200 uM [U-99% 13C; U-99% 15N] B-RAF-RBD:Rigosertib Complex I | 90% H2O/10% D2O | 200 mM | 7.4 | 1 atm | 298 | Bruker Avance 900 |
5 | 3D 1H-13C NOESY aromatic | 200 uM [U-99% 13C; U-99% 15N] B-RAF-RBD:Rigosertib Complex I | 90% H2O/10% D2O | 200 mM | 7.4 | 1 atm | 298 | Bruker Avance 900 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | Avance | 800 |
2 | Bruker | Avance | 900 |
NMR Refinement | ||
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Method | Details | Software |
DGSA-distance geometry simulated annealing | ARIA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 1024 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | ARIA | Linge, O'Donoghue and Nilges | |
2 | structure calculation | ARIA | Linge, O'Donoghue and Nilges | |
3 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
4 | peak picking | NMRView | Johnson, One Moon Scientific |