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HDAC2 WITH LIGAND BRD4884
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 PEG 400, potassium phosphate
Crystal Properties Matthews coefficient Solvent content 2.54 51.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.297 α = 90 b = 98.013 β = 90 c = 139.25 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M KB mirror pair 2013-11-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.66 80.15 95.2 0.063 9.42 2.5 141832
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.66 1.91 97.3 0.33 2.91 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.66 48.35 138529 3303 95.23 0.18556 0.18502 0.1924 0.20778 0.2119 RANDOM 23.947
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.34 0.75 -0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.786 r_dihedral_angle_4_deg 18.303 r_dihedral_angle_3_deg 10.779 r_dihedral_angle_1_deg 6.215 r_long_range_B_refined 5.758 r_long_range_B_other 5.539 r_scangle_other 1.697 r_angle_refined_deg 1.409 r_angle_other_deg 1.196 r_scbond_it 1.077
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.786 r_dihedral_angle_4_deg 18.303 r_dihedral_angle_3_deg 10.779 r_dihedral_angle_1_deg 6.215 r_long_range_B_refined 5.758 r_long_range_B_other 5.539 r_scangle_other 1.697 r_angle_refined_deg 1.409 r_angle_other_deg 1.196 r_scbond_it 1.077 r_scbond_other 1.075 r_mcangle_other 0.966 r_mcangle_it 0.965 r_mcbond_it 0.58 r_mcbond_other 0.579 r_chiral_restr 0.082 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8866 Nucleic Acid Atoms Solvent Atoms 697 Heterogen Atoms 158
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement MOLREP phasing