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Crystal structure of the human soluble adenylyl cyclase in complex with the allosteric inhibitor LRE1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277.15 100 mM sodium acetate pH 4.8
200 mM tri-sodium-citrate
15% (w/v) PEG 4000
10% (v/v) glycerol
Crystal Properties Matthews coefficient Solvent content 2.3 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.298 α = 90 b = 99.298 β = 90 c = 99.386 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-02-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918007 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 44.42 99.9 0.115 16.3 11.4 599809
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.9 99.5 1.192 2.07 11.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.79 44.42 49787 2621 99.92 0.162 0.15972 0.1707 0.20626 0.2138 RANDOM 30.704
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 0.13 0.27 -0.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.729 r_dihedral_angle_4_deg 18.356 r_dihedral_angle_3_deg 14.49 r_long_range_B_refined 8.822 r_long_range_B_other 8.821 r_scangle_other 6.644 r_dihedral_angle_1_deg 6.436 r_scbond_it 4.451 r_scbond_other 4.437 r_mcangle_it 4.339
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.729 r_dihedral_angle_4_deg 18.356 r_dihedral_angle_3_deg 14.49 r_long_range_B_refined 8.822 r_long_range_B_other 8.821 r_scangle_other 6.644 r_dihedral_angle_1_deg 6.436 r_scbond_it 4.451 r_scbond_other 4.437 r_mcangle_it 4.339 r_mcangle_other 4.339 r_mcbond_it 3.241 r_mcbond_other 3.212 r_angle_refined_deg 2.079 r_angle_other_deg 1.133 r_chiral_restr 0.159 r_bond_refined_d 0.021 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3660 Nucleic Acid Atoms Solvent Atoms 358 Heterogen Atoms 76
Software Software Software Name Purpose REFMAC refinement XDS data reduction Coot model building MOLREP phasing XSCALE data scaling