5IRD | pdb_00005ird

Solution structure of Rv1466 from Mycobacterium tuberculosis, a protein associated with [Fe-S] complex assembly and repair - Seattle Structural Genomics Center for Infectious Disease target MytuD.17486.a


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1.0 mM [U-13C; U-15N] Rv1466, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT93% H2O/7% D2O.12 M7.01 atm293Varian VXRS 750
22D 1H-13C HSQC aliphatic1.0 mM [U-13C; U-15N] Rv1466, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT93% H2O/7% D2O.12 M7.01 atm293Varian VXRS 800
32D 1H-13C HSQC aromatic1.0 mM [U-13C; U-15N] Rv1466, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT93% H2O/7% D2O.12 M7.01 atm293Varian VXRS 800
43D HNCACB1.0 mM [U-13C; U-15N] Rv1466, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT93% H2O/7% D2O.12 M7.01 atm293Varian INOVA 600
53D CBCA(CO)NH1.0 mM [U-13C; U-15N] Rv1466, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT93% H2O/7% D2O.12 M7.01 atm293Varian VXRS 750
73D HNCO1.0 mM [U-13C; U-15N] Rv1466, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT93% H2O/7% D2O.12 M7.01 atm293Varian VXRS 750
63D H(CCO)NH1.0 mM [U-13C; U-15N] Rv1466, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT93% H2O/7% D2O.12 M7.01 atm293Varian VXRS 750
103D C(CO)NH1.0 mM [U-13C; U-15N] Rv1466, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT93% H2O/7% D2O.12 M7.01 atm293Varian INOVA 500
92D Delta1.0 mM [U-13C; U-15N] Rv1466, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT93% H2O/7% D2O.12 M7.01 atm293Varian VXRS 750
8Deuterium exchange0.5 mM [U-15N] Rv1466, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT100% D2O.12 M7.01 atm293Varian VXRS 750
123D 1H-15N NOESY1.0 mM [U-13C; U-15N] Rv1466, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT93% H2O/7% D2O.12 M7.01 atm293Varian VXRS 750
113D 1H-13C NOESY aliphatic1.0 mM [U-13C; U-15N] Rv1466, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT93% H2O/7% D2O.12 M7.01 atm293Varian VXRS 800
133D 1H-13C NOESY aromatic1.0 mM [U-13C; U-15N] Rv1466, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT93% H2O/7% D2O.12 M7.01 atm293Varian VXRS 750
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA500
2VarianINOVA600
3VarianVXRS750
4VarianVXRS800
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsSTRUCTURE DETERMINATION WAS PERFORMED ITERATIVELY USING CYANA (AUTOMATED NOESY ASSIGNMENTS). A TOTAL OF 20 STRUCTURES OUT OF 100 WITH LOWEST TARGET FUNCTION FROM THE FINAL CYANA CALCULATION WERE TAKEN AND REFINED BY RESTRAINED MOLECULAR DYNAMICS/ENERGY MINIMIZATION IN EXPLICIT WATER (CNS) AFTER ADDING 5.0% TO THE UPPER BOUNDARY LIMIT OF THE DISTANCE RESTRAINTS AND THE VDW LIMIT TO THE LOWER RESTRAINT. PARAM19 WAS USED FOR THE WATER REFINEMENT CALCULATIONS.CYANA
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1data analysisSparky3.115Goddard
5peak pickingSparky3.115Goddard
2structure calculationCYANA2.1Guntert, Mumenthaler and Wuthrich
3processingFelix2007Accelrys Software Inc.
4data analysisPSVS1.5Bhattacharya and Montelione
6refinementCNS1.1Brunger, Adams, Clore, Gros, Nilges and Read