☰ Navigation Tabs
Structure of RelA bound to the 70S ribosome
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4YBB
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.368 r_dihedral_angle_1_deg 18.233 r_dihedral_angle_3_deg 17.006 r_dihedral_angle_4_deg 14.321 r_long_range_B_refined 11.169 r_long_range_B_other 11.169 r_mcangle_it 4.583 r_mcangle_other 4.583 r_scangle_other 3.173 r_mcbond_it 2.441
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.368 r_dihedral_angle_1_deg 18.233 r_dihedral_angle_3_deg 17.006 r_dihedral_angle_4_deg 14.321 r_long_range_B_refined 11.169 r_long_range_B_other 11.169 r_mcangle_it 4.583 r_mcangle_other 4.583 r_scangle_other 3.173 r_mcbond_it 2.441 r_mcbond_other 2.441 r_scbond_it 1.796 r_scbond_other 1.796 r_angle_other_deg 1.296 r_angle_refined_deg 1.061 r_chiral_restr 0.51 r_gen_planes_refined 0.009 r_bond_refined_d 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK II Cryogen Name ETHANE Sample Vitrification Details Grids were blotted for 5 s
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 98498 Reported Resolution (Å) 3 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (4YBB) Refinement Space RECIPROCAL Refinement Protocol OTHER Refinement Target Average FSC Overall B Value 112.7 Fitting Procedure Details
Data Acquisition Detector Type OTHER Electron Dose (electrons/Å**2) 35
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI POLARA 300 Minimum Defocus (nm) 1800 Maximum Defocus (nm) 3000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification 104478 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION EMAN 2.1 IMAGE ACQUISITION EPU CTF CORRECTION Gctf 0.5 MODEL FITTING UCSF Chimera 1.8.1 MODEL FITTING Coot 0.8.3 INITIAL EULER ASSIGNMENT RELION 1.4 FINAL EULER ASSIGNMENT RELION 1.4 CLASSIFICATION RELION 1.4 RECONSTRUCTION RELION 1.4 MODEL REFINEMENT REFMAC 5.8.0124
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE 183615