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NMR solution structure of Mayaro virus macro domain
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 2 2D 1H-15N HSQC 0.4 mM [U-99% 15N] Mayaro virus' macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE 600 17 3D 1H-15N NOESY 0.4 mM [U-99% 15N] Mayaro virus' macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE 600 15 3D HNHA 0.4 mM [U-99% 15N] Mayaro virus' macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE 600 3 3D CBCA(CO)NH 0.4 mM [U-99% 13C; U-99% 15N] Mayaro virus' macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE 600 19 3D 1H-13C NOESY aliphatic 0.4 mM [U-99% 13C; U-99% 15N] Mayaro virus' macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE 600 18 3D 1H-13C NOESY aromatic 0.4 mM [U-99% 13C; U-99% 15N] Mayaro virus' macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE 600 11 3D HNCO 0.4 mM [U-99% 13C; U-99% 15N] Mayaro virus' macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE 600 20 3D HN(CA)CO 0.4 mM [U-99% 13C; U-99% 15N] Mayaro virus' macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE 600 10 3D HNCA 0.4 mM [U-99% 13C; U-99% 15N] Mayaro virus' macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE 600 14 3D HCCH-TOCSY 0.4 mM [U-99% 13C; U-99% 15N] Mayaro virus' macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE 600 13 3D HN(CO)CA 0.4 mM [U-99% 13C; U-99% 15N] Mayaro virus' macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE 600 21 2D 1H-13C HSQC 0.4 mM [U-99% 13C; U-99% 15N] Mayaro virus' macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE 600 24 3D 1H-13C NOESY 0.4 mM [U-99% 13C; U-99% 15N] Mayaro virus' macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE 600 22 2D 1H-13C HSQC 0.4 mM [U-99% 13C; U-99% 15N] Mayaro virus' macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE 600 12 2D 1H-15N HSQC TROSY 0.4 mM [U-99% 15N] Mayaro virus' macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE 600 9 3D HNCACB 0.4 mM [U-99% 13C; U-99% 15N] Mayaro virus' macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE 600 8 3D HBHA(CO)NH 0.4 mM [U-99% 13C; U-99% 15N] Mayaro virus' macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE 600 4 2D 1H-15N HSQC 0.4 mM [U-15N]-Ala-Leu-Val Mayaro virus' macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE 700 5 2D 1H-15N HSQC 0.4 mM [U-14N]-Arg Mayaro virus' macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE 700 6 3D HNCACB 0.4 mM [U-100% 13C; U-100% 15N; U-80% 2H] Mayaro virus' macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE 600 7 2D 1H-1H NOESY 0.4 mM Mayaro virus' macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 700
NMR Refinement Method Details Software molecular dynamics Amber
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 21 Conformers Submitted Total Number 21 Representative Model 1 (minimized average structure)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin 3.3 Bruker Biospin 2 collection TopSpin 3.2 Bruker Biospin 3 processing TopSpin 3.3 Bruker Biospin 4 processing TopSpin 3.2 Bruker Biospin 5 chemical shift assignment CARA 1.5.5 Keller and Wuthrich 6 peak picking XEASY Bartels et al. 7 structure calculation DYANA Guntert, Braun and Wuthrich 8 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 9 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman