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Crystal Structure of Mycobacterium Tuberculosis ATP-independent Proteasome activator
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.9 293 0.2 M ammonium acetate, 0.1 M sodium citrate 29% 2-methyl-2,4-pentanediol
Crystal Properties Matthews coefficient Solvent content 4.89 74.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.52 α = 90 b = 100.52 β = 90 c = 229.191 γ = 120
Symmetry Space Group P 6 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 2014-11-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9793 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.88 42 99.9 15.7 19.3 16296
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.88 41.99 15461 820 99.8 0.19716 0.19623 0.2003 0.21489 0.2139 RANDOM 30.634
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 0.17 0.17 -0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.241 r_dihedral_angle_4_deg 22.82 r_dihedral_angle_3_deg 16.355 r_dihedral_angle_1_deg 4.002 r_angle_refined_deg 1.048 r_angle_other_deg 0.704 r_chiral_restr 0.049 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.241 r_dihedral_angle_4_deg 22.82 r_dihedral_angle_3_deg 16.355 r_dihedral_angle_1_deg 4.002 r_angle_refined_deg 1.048 r_angle_other_deg 0.704 r_chiral_restr 0.049 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1740 Nucleic Acid Atoms Solvent Atoms 74 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHENIX phasing