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The crystal structure of CopC from Methylosinus trichosporium OB3b
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.1 M HEPES sodium salt, 0.8 M sodium phosphate, and 0.8 M potassium phosphate, pH 7.5.
Crystal Properties Matthews coefficient Solvent content 2.32 47.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 28.671 α = 90 b = 54.125 β = 90 c = 65.371 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 CCD MARMOSAIC 300 mm CCD 2015-04-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.033 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.46 27.98 99.9 41.9 8.6 17434
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.46 27.98 17434 938 99.7 0.1664 0.16512 0.175 0.19112 0.2058 RANDOM 10.371
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.03 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 20.747 r_sphericity_bonded 11.862 r_dihedral_angle_3_deg 10.774 r_dihedral_angle_1_deg 6.747 r_dihedral_angle_4_deg 6.071 r_long_range_B_refined 3.467 r_long_range_B_other 3.467 r_scangle_other 1.795 r_angle_refined_deg 1.665 r_scbond_it 1.168
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 20.747 r_sphericity_bonded 11.862 r_dihedral_angle_3_deg 10.774 r_dihedral_angle_1_deg 6.747 r_dihedral_angle_4_deg 6.071 r_long_range_B_refined 3.467 r_long_range_B_other 3.467 r_scangle_other 1.795 r_angle_refined_deg 1.665 r_scbond_it 1.168 r_scbond_other 1.164 r_angle_other_deg 0.964 r_mcangle_other 0.813 r_mcangle_it 0.812 r_mcbond_it 0.511 r_mcbond_other 0.499 r_chiral_restr 0.108 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 771 Nucleic Acid Atoms Solvent Atoms 88 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing