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Insulin with proline analog HzP at position B28 in the R6 state
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 295 300 mM Tris, 17 mM zinc acetate, 1% phenol, 7.5% acetone, 2.675 M sodium citrate
Crystal Properties Matthews coefficient Solvent content 2.32 46.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.156 α = 90 b = 60.68 β = 110.82 c = 60.665 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-06-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.9795 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.28 56.7 96 0.042 0.028 0.997 13.6 3 79335
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.28 1.3 62.1 0.451 0.359 0.678 2.1 2.2 2613
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.28 56.7 75363 3951 95.91 0.13672 0.13508 0.1447 0.16843 0.1783 RANDOM 23.477
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.62 0.43 -0.41 -0.41
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 26.701 r_sphericity_bonded 23.676 r_scangle_other 13.169 r_long_range_B_refined 13.051 r_long_range_B_other 13.048 r_scbond_it 11.45 r_scbond_other 11.446 r_rigid_bond_restr 7.279 r_mcangle_it 5.657 r_mcangle_other 5.657
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 26.701 r_sphericity_bonded 23.676 r_scangle_other 13.169 r_long_range_B_refined 13.051 r_long_range_B_other 13.048 r_scbond_it 11.45 r_scbond_other 11.446 r_rigid_bond_restr 7.279 r_mcangle_it 5.657 r_mcangle_other 5.657 r_mcbond_other 5.013 r_mcbond_it 5 r_angle_refined_deg 1.259 r_angle_other_deg 1.127 r_chiral_restr 0.125 r_bond_refined_d 0.014 r_gen_planes_refined 0.011 r_bond_other_d 0.008 r_gen_planes_other 0.007 r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2349 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PHASER phasing PDB_EXTRACT data extraction