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Solution Structure of TAZ2-p53AD2
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-15N NOESY 1 mM [U-13C; U-15N] TAZ2-p53AD2, 20 mM TRIS, 50 mM sodium chloride, 2 mM DTT, 10 % [U-2H] D2O 90% H2O/10% D2O 50 mM 6.8 1 atm 305 Bruker AVANCE 900 2 3D 1H-13C NOESY 1 mM [U-13C; U-15N] TAZ2-p53AD2, 20 mM [U-2H] TRIS, 50 mM sodium chloride, 2 mM [U-2H] DTT, 99 % [U-2H] D2O 99% D2O, 1% H2O 50 mM 6.4 1 atm 305 Bruker AVANCE 900 3 3D HNCACB 1 mM [U-13C; U-15N] TAZ2-p53AD2, 20 mM TRIS, 50 mM sodium chloride, 2 mM DTT, 5 % [U-2H] D2O 90% H2O/10% D2O 50 mM 6.8 1 atm 305 Bruker DRX 600 4 3D HCCH-COSY 1 mM [U-13C] TAZ2, 1 mM p53AD2(38-61), 20 mM [U-2H] TRIS, 50 mM sodium chloride, 2 mM [U-2H] DTT, 5 % [U-2H] D2O 99% D2O, 1% H2O 50 mM 6.4 1 atm 305 Bruker DRX 600 5 3D HCCH-COSY 1 mM [U-13C] p53AD2, 1 mM TAZ2, 20 mM [U-2H] TRIS, 50 mM sodium chloride, 2 mM [U-2H] DTT, 99 % [U-2H] D2O 99% D2O, 1% H2O 50 mM 6.4 1 atm 305 Bruker DRX 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 900 2 Bruker DRX 600
NMR Refinement Method Details Software simulated annealing, molecular dynamics Initial structure generation, Refinement of CYANA structures NMRView
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment NMRView 5.0.4 Johnson, One Moon Scientific 2 structure calculation CYANA 2.1 Guntert, Mumenthaler and Wuthrich 3 refinement Amber 12 Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman 4 data analysis PSVS 1.5 Bhattacharya and Montelione