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The crystal structure of the MERS-CoV macro domain with ADP-ribose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FAV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.1 M Bis-Tris propane pH 7.0,
1.3 M sodium citrate tribasic dihydrate.
Crystal Properties Matthews coefficient Solvent content 2.64 53.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.3 α = 90 b = 66.53 β = 90 c = 89.5 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2013-05-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 0.992 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 53.39 100 0.047 27.6 10.9 24489
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.59 1.68 100 0.211 9.2 10.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2FAV 1.59 53.39 24489 1315 99.99 0.14219 0.14092 0.1407 0.16534 0.1653 RANDOM 20.767
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.19 1.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.781 r_dihedral_angle_4_deg 18.385 r_dihedral_angle_3_deg 12.511 r_long_range_B_refined 7.982 r_long_range_B_other 7.607 r_dihedral_angle_1_deg 6.693 r_scangle_other 5.194 r_scbond_it 3.701 r_scbond_other 3.698 r_mcangle_other 3.346
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.781 r_dihedral_angle_4_deg 18.385 r_dihedral_angle_3_deg 12.511 r_long_range_B_refined 7.982 r_long_range_B_other 7.607 r_dihedral_angle_1_deg 6.693 r_scangle_other 5.194 r_scbond_it 3.701 r_scbond_other 3.698 r_mcangle_other 3.346 r_mcangle_it 3.344 r_angle_refined_deg 2.487 r_mcbond_it 2.282 r_mcbond_other 2.268 r_angle_other_deg 1.187 r_chiral_restr 0.155 r_bond_refined_d 0.027 r_gen_planes_refined 0.014 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1242 Nucleic Acid Atoms Solvent Atoms 179 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing