X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.6293.1527% PEG 3350, 0.1 M HEPES pH 7.6, 0.2 M Ammonium sulfate, 5 mM ZnSO4
Crystal Properties
Matthews coefficientSolvent content
2.4149.05

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 38.556α = 90
b = 49.828β = 90
c = 95.882γ = 90
Symmetry
Space GroupP 21 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2014-02-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-11.273ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.5347.9499.10.0660.99716.766527
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.532.651.822

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5HO52.5347.94583262898.330.244890.239570.29414RANDOM95.457
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.274.57-3.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.351
r_dihedral_angle_3_deg17.386
r_dihedral_angle_4_deg11.745
r_long_range_B_refined9.302
r_long_range_B_other9.299
r_scangle_other6.523
r_dihedral_angle_1_deg6.27
r_mcangle_it4.946
r_mcangle_other4.944
r_scbond_it4.019
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.351
r_dihedral_angle_3_deg17.386
r_dihedral_angle_4_deg11.745
r_long_range_B_refined9.302
r_long_range_B_other9.299
r_scangle_other6.523
r_dihedral_angle_1_deg6.27
r_mcangle_it4.946
r_mcangle_other4.944
r_scbond_it4.019
r_scbond_other4.016
r_mcbond_other3.238
r_mcbond_it3.237
r_angle_refined_deg1.178
r_angle_other_deg0.97
r_chiral_restr0.073
r_bond_refined_d0.006
r_gen_planes_refined0.004
r_bond_other_d0.003
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1342
Nucleic Acid Atoms
Solvent Atoms4
Heterogen Atoms3

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing