X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4LTOPDB entry 4LTO

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.827730% PEG400, 20 mM MES, pH 5.8
Crystal Properties
Matthews coefficientSolvent content
5.9979.48

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 137.1α = 90
b = 137.99β = 90
c = 173.16γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray90CCDADSC QUANTUM 315r2014-03-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.11.0332ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.868.697.40.666.223.918097
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 4LTO3.8151508879596.010.274670.27270.31198RANDOM162.235
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-11.365.126.24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.024
r_long_range_B_refined32.994
r_long_range_B_other32.991
r_mcangle_it24.784
r_mcangle_other24.783
r_scangle_other24.305
r_dihedral_angle_3_deg21.356
r_dihedral_angle_4_deg19.007
r_mcbond_it15.363
r_mcbond_other15.32
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.024
r_long_range_B_refined32.994
r_long_range_B_other32.991
r_mcangle_it24.784
r_mcangle_other24.783
r_scangle_other24.305
r_dihedral_angle_3_deg21.356
r_dihedral_angle_4_deg19.007
r_mcbond_it15.363
r_mcbond_other15.32
r_scbond_it14.712
r_scbond_other14.708
r_dihedral_angle_1_deg10.633
r_angle_other_deg3.918
r_angle_refined_deg1.894
r_chiral_restr0.095
r_bond_refined_d0.012
r_gen_planes_refined0.007
r_gen_planes_other0.006
r_bond_other_d
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3694
Nucleic Acid Atoms
Solvent Atoms2
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
SCALAdata scaling
PHASERphasing