X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION293100 mM Tris (pH 7.0), 14 % PEG 6000, 15 % Glycerol, 200 mM MgCl2
Crystal Properties
Matthews coefficientSolvent content
2.4449.64

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.73α = 89.9
b = 78.1β = 89.85
c = 153.75γ = 78.94
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2015-03-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-10.97626ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.341.996.60.03521.83.683768
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.4295.83.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.541.962038332696.790.225770.223690.26323RANDOM88.644
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.993.320.533.82-0.31-5.8
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.514
r_dihedral_angle_4_deg15.476
r_dihedral_angle_3_deg15.364
r_long_range_B_refined7.734
r_long_range_B_other7.734
r_dihedral_angle_1_deg5.629
r_scangle_other5.436
r_mcangle_it5.002
r_mcangle_other5.002
r_scbond_it3.43
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.514
r_dihedral_angle_4_deg15.476
r_dihedral_angle_3_deg15.364
r_long_range_B_refined7.734
r_long_range_B_other7.734
r_dihedral_angle_1_deg5.629
r_scangle_other5.436
r_mcangle_it5.002
r_mcangle_other5.002
r_scbond_it3.43
r_scbond_other3.43
r_mcbond_it3.305
r_mcbond_other3.304
r_angle_refined_deg1.226
r_angle_other_deg0.769
r_chiral_restr0.064
r_bond_refined_d0.008
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms12803
Nucleic Acid Atoms
Solvent Atoms9
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
AutoSolphasing