☰ Navigation Tabs
the complex of Glycoside Hydrolase 5 Lichenase from Caldicellulosiruptor sp. F32 E188Q mutant and cellotetraose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4X0V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 8.5 291 0.2 M ammonium sulfate, 0.1 M Tris, 25% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.62 53.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.581 α = 90 b = 76.315 β = 90 c = 95.611 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.979 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.703 28.4 98.31 33.5 5 49925 13.3259821509
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4X0V 1.70310440144 28.3996626024 1.52833935836 49923 2539 98.304584121 0.142735000316 0.14126438051 0.1437 0.169842103488 0.1726 18.1023835659
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 8.86810952082 f_angle_d 0.991562108462 f_chiral_restr 0.0619506266646 f_bond_d 0.00854155874718 f_plane_restr 0.00683411717955
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3067 Nucleic Acid Atoms Solvent Atoms 443 Heterogen Atoms 51
Software Software Software Name Purpose PHENIX refinement Aimless data scaling PHASER data processing PDB_EXTRACT data extraction PHASER phasing