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CYP153D17 from Sphingomonas sp. PAMC 26605
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 23% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 4.38 71.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.837 α = 90 b = 110.837 β = 90 c = 113.18 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2016-04-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97933 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.08 95.99 91.3 26.76 4.5 14358
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.1 50.01 13128 689 92.18 0.26569 0.26193 0.263 0.33956 0.3476 RANDOM 97.778
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 0.01 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.981 r_dihedral_angle_4_deg 19.748 r_dihedral_angle_3_deg 19.282 r_long_range_B_refined 16.14 r_long_range_B_other 16.138 r_mcangle_it 11.299 r_mcangle_other 11.297 r_dihedral_angle_1_deg 9.953 r_scangle_other 9.868 r_mcbond_it 7.087
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.981 r_dihedral_angle_4_deg 19.748 r_dihedral_angle_3_deg 19.282 r_long_range_B_refined 16.14 r_long_range_B_other 16.138 r_mcangle_it 11.299 r_mcangle_other 11.297 r_dihedral_angle_1_deg 9.953 r_scangle_other 9.868 r_mcbond_it 7.087 r_mcbond_other 7.085 r_scbond_it 6.106 r_scbond_other 6.104 r_angle_refined_deg 1.797 r_angle_other_deg 1.175 r_chiral_restr 0.109 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3233 Nucleic Acid Atoms Solvent Atoms 7 Heterogen Atoms 55
Software Software Software Name Purpose REFMAC refinement HKL-2000 data processing HKL-2000 data scaling