X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2932%(v/v) polyethylene glycol 400, 0.1M HEPES
Crystal Properties
Matthews coefficientSolvent content
2.3647.88

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 63.604α = 90
b = 93.25β = 90
c = 118.524γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU SATURN 9442014-08-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-E+ SUPERBRIGHT1.5417

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.87501000.07119.484.759165
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.871.91000.4813.314.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.8729.6356102298799.840.154940.152850.19396RANDOM25.937
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.043
r_dihedral_angle_4_deg22.645
r_dihedral_angle_3_deg12.64
r_long_range_B_refined7.724
r_long_range_B_other7.185
r_dihedral_angle_1_deg6.387
r_scangle_other4.859
r_scbond_it3.513
r_scbond_other3.512
r_mcangle_other3.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.043
r_dihedral_angle_4_deg22.645
r_dihedral_angle_3_deg12.64
r_long_range_B_refined7.724
r_long_range_B_other7.185
r_dihedral_angle_1_deg6.387
r_scangle_other4.859
r_scbond_it3.513
r_scbond_other3.512
r_mcangle_other3.25
r_mcangle_it3.249
r_mcbond_it2.66
r_mcbond_other2.658
r_angle_other_deg2.004
r_angle_refined_deg1.787
r_chiral_restr0.117
r_bond_refined_d0.017
r_gen_planes_refined0.01
r_gen_planes_other0.009
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5238
Nucleic Acid Atoms
Solvent Atoms468
Heterogen Atoms88

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling