5GU0

Crystal structure of Au.CL-apo-E45C/R52C-rHLFr


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP293Ammonium sulphate, Cadmium sulphate
Crystal Properties
Matthews coefficientSolvent content
3.1260.52

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 180.892α = 90
b = 180.892β = 90
c = 180.892γ = 90
Symmetry
Space GroupF 4 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2014-06-24MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL38B11.03586, 1.05777SPring-8BL38B1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.954099.965.71119055

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.9531.981805598199.720.178710.177340.20494RANDOM29.491
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.51
r_dihedral_angle_4_deg22.583
r_dihedral_angle_3_deg15.879
r_long_range_B_refined7.754
r_long_range_B_other7.672
r_scangle_other6.596
r_dihedral_angle_1_deg5.302
r_scbond_it4.37
r_scbond_other4.22
r_mcangle_other3.611
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.51
r_dihedral_angle_4_deg22.583
r_dihedral_angle_3_deg15.879
r_long_range_B_refined7.754
r_long_range_B_other7.672
r_scangle_other6.596
r_dihedral_angle_1_deg5.302
r_scbond_it4.37
r_scbond_other4.22
r_mcangle_other3.611
r_mcangle_it3.607
r_mcbond_it2.62
r_mcbond_other2.594
r_angle_refined_deg1.939
r_angle_other_deg1.061
r_chiral_restr0.113
r_bond_refined_d0.02
r_gen_planes_refined0.009
r_bond_other_d0.003
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1341
Nucleic Acid Atoms
Solvent Atoms77
Heterogen Atoms29

Software

Software
Software NamePurpose
REFMACrefinement
MOLREPdata reduction
HKL-2000data scaling