5GQS | pdb_00005gqs

NMR based solution structure of PTS system, galactitol-specific IIB component from methicillin resistant Staphylococcus aureus

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	11.79 mg/mL 15N, 13C PTS system, galactitol-specific IIB component	95% H2O/5% D2O	50 mM Sodium Phosphate, 50 mM NaCl mM	6.9	ambient	298	Bruker AVANCE 600
2	3D HNCACB	11.79 mg/mL 15N, 13C PTS system, galactitol-specific IIB component	95% H2O/5% D2O	50 mM Sodium Phosphate, 50 mM NaCl mM	6.9	ambient	298	Bruker AVANCE 600
3	3D HNCO	11.79 mg/mL 15N, 13C PTS system, galactitol-specific IIB component	95% H2O/5% D2O	50 mM Sodium Phosphate, 50 mM NaCl mM	6.9	ambient	298	Bruker AVANCE 600
4	3D 1H-15N NOESY	11.79 mg/mL 15N, 13C PTS system, galactitol-specific IIB component	95% H2O/5% D2O	50 mM Sodium Phosphate, 50 mM NaCl mM	6.9	ambient	298	Bruker AVANCE 600
5	3D 1H-13C NOESY aliphatic	11.79 mg/mL 15N, 13C PTS system, galactitol-specific IIB component	95% H2O/5% D2O	50 mM Sodium Phosphate, 50 mM NaCl mM	6.9	ambient	298	Bruker AVANCE 800
6	3D 1H-13C NOESY aromatic	11.79 mg/mL 15N, 13C PTS system, galactitol-specific IIB component	95% H2O/5% D2O	50 mM Sodium Phosphate, 50 mM NaCl mM	6.9	ambient	298	Bruker AVANCE 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	800
2	Bruker	AVANCE	600

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	Sparky	3.114	T. D. Goddard and D. G. Kneller
5	peak picking	Sparky	3.114	T. D. Goddard and D. G. Kneller
2	refinement	CYANA	3.97	Guntert, Mumenthaler and Wuthrich
6	data analysis	Sparky	3.114	T. D. Goddard and D. G. Kneller
7	processing	TopSpin	3.5	Bruker Biospin
8	collection	TopSpin	3.2	Bruker Biospin
9	structure calculation	CYANA	3.97	Guntert, Mumenthaler and Wuthrich
10	data analysis	CARA	1.8.4.2	Keller and Wuthrich
11	chemical shift assignment	CARA	1.8.4.2	Keller and Wuthrich

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.