5GOW | pdb_00005gow

Solution structure of the complex between DP1 acidic region and TFIIH p62 PH domain

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.35 mM [U-99% 13C; U-99% 15N] DP1, 0.42 mM TFIIH p62	90% H2O/10% D2O	0.02 M	6.8	760 Torr	305	Bruker AVANCE III 950
2	2D 1H-13C HSQC	0.35 mM [U-99% 13C; U-99% 15N] DP1, 0.42 mM TFIIH p62	100% D2O	0.02 M	6.8	760 Torr	305	Bruker AVANCE III 950
3	2D 1H-13C HSQC aromatic	0.35 mM [U-99% 13C; U-99% 15N] DP1, 0.42 mM TFIIH p62	100% D2O	0.02 M	6.8	760 Torr	305	Bruker AVANCE III 950
4	3D CBCA(CO)NH	0.35 mM [U-99% 13C; U-99% 15N] DP1, 0.42 mM TFIIH p62	90% H2O/10% D2O	0.02 M	6.8	760 Torr	305	Bruker AVANCE III 600
5	3D HNCO	0.35 mM [U-99% 13C; U-99% 15N] DP1, 0.42 mM TFIIH p62	90% H2O/10% D2O	0.02 M	6.8	760 Torr	305	Bruker AVANCE III 600
6	3D HBHA(CO)NH	0.35 mM [U-99% 13C; U-99% 15N] DP1, 0.42 mM TFIIH p62	90% H2O/10% D2O	0.02 M	6.8	760 Torr	305	Bruker AVANCE III 600
7	3D C(CO)NH	0.35 mM [U-99% 13C; U-99% 15N] DP1, 0.42 mM TFIIH p62	90% H2O/10% D2O	0.02 M	6.8	760 Torr	305	Bruker AVANCE III 600
8	3D H(CCO)NH	0.35 mM [U-99% 13C; U-99% 15N] DP1, 0.42 mM TFIIH p62	90% H2O/10% D2O	0.02 M	6.8	760 Torr	305	Bruker AVANCE III 600
9	3D 1H-15N NOESY	0.35 mM [U-99% 13C; U-99% 15N] DP1, 0.42 mM TFIIH p62	90% H2O/10% D2O	0.02 M	6.8	760 Torr	305	Bruker AVANCE III 950
10	3D 1H-13C NOESY	0.35 mM [U-99% 13C; U-99% 15N] DP1, 0.42 mM TFIIH p62	100% D2O	0.02 M	6.8	760 Torr	305	Bruker AVANCE III 950
11	2D 1H-15N HSQC	0.35 mM [U-99% 13C; U-99% 15N] TFIIH p62, 0.42 mM DP1	90% H2O/10% D2O	0.02 M	6.8	760 Torr	305	Bruker AVANCE III 950
12	2D 1H-13C HSQC	0.35 mM [U-99% 13C; U-99% 15N] TFIIH p62, 0.42 mM DP1	100% D2O	0.02 M	6.8	760 Torr	305	Bruker AVANCE III 950
13	2D 1H-13C HSQC aromatic	0.35 mM [U-99% 13C; U-99% 15N] TFIIH p62, 0.42 mM DP1	100% D2O	0.02 M	6.8	760 Torr	305	Bruker AVANCE III 950
14	3D CBCA(CO)NH	0.35 mM [U-99% 13C; U-99% 15N] TFIIH p62, 0.42 mM DP1	90% H2O/10% D2O	0.02 M	6.8	760 Torr	305	Bruker AVANCE III 600
15	3D HNCO	0.35 mM [U-99% 13C; U-99% 15N] TFIIH p62, 0.42 mM DP1	90% H2O/10% D2O	0.02 M	6.8	760 Torr	305	Bruker AVANCE III 600
16	3D HBHA(CO)NH	0.35 mM [U-99% 13C; U-99% 15N] TFIIH p62, 0.42 mM DP1	90% H2O/10% D2O	0.02 M	6.8	760 Torr	305	Bruker AVANCE III 600
17	3D C(CO)NH	0.35 mM [U-99% 13C; U-99% 15N] TFIIH p62, 0.42 mM DP1	90% H2O/10% D2O	0.02 M	6.8	760 Torr	305	Bruker AVANCE III 600
18	3D H(CCO)NH	0.35 mM [U-99% 13C; U-99% 15N] TFIIH p62, 0.42 mM DP1	90% H2O/10% D2O	0.02 M	6.8	760 Torr	305	Bruker AVANCE III 600
19	3D 1H-15N NOESY	0.35 mM [U-99% 13C; U-99% 15N] TFIIH p62, 0.42 mM DP1	90% H2O/10% D2O	0.02 M	6.8	760 Torr	305	Bruker AVANCE III 950
20	3D 1H-13C NOESY	0.35 mM [U-99% 13C; U-99% 15N] TFIIH p62, 0.42 mM DP1	100% D2O	0.02 M	6.8	760 Torr	305	Bruker AVANCE III 950

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	950
2	Bruker	AVANCE III	600

NMR Refinement
Method	Details	Software
DGSA-distance geometry simulated annealing		X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRDraw		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	chemical shift assignment	NMRView		Johnson, One Moon Scientific
3	structure calculation	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
4	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
5	data analysis	MOLMOL		Koradi, Billeter and Wuthrich
6	data analysis	ProcheckNMR		Laskowski and MacArthur