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Crystal structure of alkaline invertase InvA from Anabaena sp. PCC 7120 complexed with fructose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 1.5 M Lithium sulfate, 0.1 M Tris
Crystal Properties Matthews coefficient Solvent content 2.44 49.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.772 α = 90 b = 177.927 β = 90 c = 181.557 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2016-03-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.97916 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 97.3 25.9 6.3 87561
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 95 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.11 31.79 83084 4392 96.8 0.194 0.193 0.1987 0.218 0.2187 RANDOM 35.24
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.94 -1.16 -0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.14 r_dihedral_angle_4_deg 16.621 r_dihedral_angle_3_deg 12.756 r_dihedral_angle_1_deg 4.898 r_long_range_B_refined 3.96 r_long_range_B_other 3.96 r_scangle_other 2.506 r_mcangle_it 2.035 r_mcangle_other 2.035 r_scbond_it 1.467
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.14 r_dihedral_angle_4_deg 16.621 r_dihedral_angle_3_deg 12.756 r_dihedral_angle_1_deg 4.898 r_long_range_B_refined 3.96 r_long_range_B_other 3.96 r_scangle_other 2.506 r_mcangle_it 2.035 r_mcangle_other 2.035 r_scbond_it 1.467 r_scbond_other 1.467 r_mcbond_it 1.207 r_mcbond_other 1.207 r_angle_refined_deg 1.044 r_angle_other_deg 0.737 r_chiral_restr 0.057 r_bond_refined_d 0.005 r_bond_other_d 0.005 r_gen_planes_refined 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10731 Nucleic Acid Atoms Solvent Atoms 455 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement PHENIX phasing MOLREP model building