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Solution structure of nedd8 from Trypanosoma brucei
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 20 mM NaH2PO4 Sodium dihydrogen phosphate, 150 nM NaCl sodium chloride, 25 uM Arg arginine, 25 uM Glu glutamine, 2 mM DTT Dithiothreitol, 2 uM EDTA Ethylene Diamine Tetraacetic Acid 100% D2O 150 mM 6.7 1 atm 293 Bruker DMX 500 2 3D CBCA(CO)NH 20 mM NaH2PO4 Sodium dihydrogen phosphate, 150 nM NaCl sodium chloride, 25 uM Arg arginine, 25 uM Glu glutamine, 2 mM DTT Dithiothreitol, 2 uM EDTA Ethylene Diamine Tetraacetic Acid 100% D2O 150 mM 6.7 1 atm 293 Bruker DMX 500 3 3D HBHA(CO)NH 20 mM NaH2PO4 Sodium dihydrogen phosphate, 150 nM NaCl sodium chloride, 25 uM Arg arginine, 25 uM Glu glutamine, 2 mM DTT Dithiothreitol, 2 uM EDTA Ethylene Diamine Tetraacetic Acid 100% D2O 150 mM 6.7 1 atm 293 Bruker DMX 500 4 3D 1H-15N NOESY 20 mM NaH2PO4 Sodium dihydrogen phosphate, 150 nM NaCl sodium chloride, 25 uM Arg arginine, 25 uM Glu glutamine, 2 mM DTT Dithiothreitol, 2 uM EDTA Ethylene Diamine Tetraacetic Acid 100% D2O 150 mM 6.7 1 atm 293 Bruker DMX 500 5 3D H(CCO)NH 20 mM NaH2PO4 Sodium dihydrogen phosphate, 150 nM NaCl sodium chloride, 25 uM Arg arginine, 25 uM Glu glutamine, 2 mM DTT Dithiothreitol, 2 uM EDTA Ethylene Diamine Tetraacetic Acid 100% D2O 150 mM 6.7 1 atm 293 Bruker DMX 500
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DMX 500
NMR Refinement Method Details Software simulated annealing CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 500 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 data analysis NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 data analysis NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 chemical shift assignment Sparky Goddard 4 structure calculation CYANA Guntert, Mumenthaler and Wuthrich