5GO0 | pdb_00005go0

Solution structure of nedd8 from Trypanosoma brucei


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC20 mM NaH2PO4 Sodium dihydrogen phosphate, 150 nM NaCl sodium chloride, 25 uM Arg arginine, 25 uM Glu glutamine, 2 mM DTT Dithiothreitol, 2 uM EDTA Ethylene Diamine Tetraacetic Acid100% D2O150 mM6.71 atm293Bruker DMX 500
23D CBCA(CO)NH20 mM NaH2PO4 Sodium dihydrogen phosphate, 150 nM NaCl sodium chloride, 25 uM Arg arginine, 25 uM Glu glutamine, 2 mM DTT Dithiothreitol, 2 uM EDTA Ethylene Diamine Tetraacetic Acid100% D2O150 mM6.71 atm293Bruker DMX 500
33D HBHA(CO)NH20 mM NaH2PO4 Sodium dihydrogen phosphate, 150 nM NaCl sodium chloride, 25 uM Arg arginine, 25 uM Glu glutamine, 2 mM DTT Dithiothreitol, 2 uM EDTA Ethylene Diamine Tetraacetic Acid100% D2O150 mM6.71 atm293Bruker DMX 500
43D 1H-15N NOESY20 mM NaH2PO4 Sodium dihydrogen phosphate, 150 nM NaCl sodium chloride, 25 uM Arg arginine, 25 uM Glu glutamine, 2 mM DTT Dithiothreitol, 2 uM EDTA Ethylene Diamine Tetraacetic Acid100% D2O150 mM6.71 atm293Bruker DMX 500
53D H(CCO)NH20 mM NaH2PO4 Sodium dihydrogen phosphate, 150 nM NaCl sodium chloride, 25 uM Arg arginine, 25 uM Glu glutamine, 2 mM DTT Dithiothreitol, 2 uM EDTA Ethylene Diamine Tetraacetic Acid100% D2O150 mM6.71 atm293Bruker DMX 500
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDMX500
NMR Refinement
MethodDetailsSoftware
simulated annealingCYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number500
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1data analysisNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2data analysisNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3chemical shift assignmentSparkyGoddard
4structure calculationCYANAGuntert, Mumenthaler and Wuthrich