5GHD | pdb_00005ghd

SOLUTION STRUCTURE OF LYS39 ACETYLATED HUMAN SUMO1


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM [U-100% 15N] SUMO1 K39Ac, 10 mM potassium phosphate, 100 mM potassium chloride, 2 mM DTT, 0.1 mM EDTA, 0.001 % sodium azide90% H2O/10% D2O100 mM KCl mM6.5AMBIENT ATM atm290Bruker AVANCE 800
22D 1H-13C HSQC1 mM [U-100% 13C; U-100% 15N] SUMO1 K39Ac, 10 mM potassium phosphate, 100 mM potassium chloride, 2 mM DTT, 0.1 mM EDTA, 0.001 % sodium azide90% H2O/10% D2O100 mM KCl mM6.5AMBIENT ATM atm290Bruker AVANCE 800
33D HNCO1 mM [U-100% 13C; U-100% 15N] SUMO1 K39Ac, 10 mM potassium phosphate, 100 mM potassium chloride, 2 mM DTT, 0.1 mM EDTA, 0.001 % sodium azide90% H2O/10% D2O100 mM KCl mM6.5AMBIENT ATM atm290Bruker AVANCE III 600
43D HNCA1 mM [U-100% 13C; U-100% 15N] SUMO1 K39Ac, 10 mM potassium phosphate, 100 mM potassium chloride, 2 mM DTT, 0.1 mM EDTA, 0.001 % sodium azide90% H2O/10% D2O100 mM KCl mM6.5AMBIENT ATM atm290Bruker AVANCE III 600
53D HN(CO)CA1 mM [U-100% 13C; U-100% 15N] SUMO1 K39Ac, 10 mM potassium phosphate, 100 mM potassium chloride, 2 mM DTT, 0.1 mM EDTA, 0.001 % sodium azide90% H2O/10% D2O100 mM KCl mM6.5AMBIENT ATM atm290Bruker AVANCE III 600
63D HNCACB1 mM [U-100% 13C; U-100% 15N] SUMO1 K39Ac, 10 mM potassium phosphate, 100 mM potassium chloride, 2 mM DTT, 0.1 mM EDTA, 0.001 % sodium azide90% H2O/10% D2O100 mM KCl mM6.5AMBIENT ATM atm290Bruker AVANCE III 600
73D CBCA(CO)NH1 mM [U-100% 13C; U-100% 15N] SUMO1 K39Ac, 10 mM potassium phosphate, 100 mM potassium chloride, 2 mM DTT, 0.1 mM EDTA, 0.001 % sodium azide90% H2O/10% D2O100 mM KCl mM6.5AMBIENT ATM atm290Bruker AVANCE III 600
83D HCCH-TOCSY1 mM [U-100% 13C; U-100% 15N] SUMO1 K39Ac, 10 mM potassium phosphate, 100 mM potassium chloride, 2 mM DTT, 0.1 mM EDTA, 0.001 % sodium azide90% H2O/10% D2O100 mM KCl mM6.5AMBIENT ATM atm290Bruker AVANCE III 600
93D HCCH-COSY1 mM [U-100% 13C; U-100% 15N] SUMO1 K39Ac, 10 mM potassium phosphate, 100 mM potassium chloride, 2 mM DTT, 0.1 mM EDTA, 0.001 % sodium azide90% H2O/10% D2O100 mM KCl mM6.5AMBIENT ATM atm290Bruker AVANCE III 600
103D HBHA(CO)NH1 mM [U-100% 13C; U-100% 15N] SUMO1 K39Ac, 10 mM potassium phosphate, 100 mM potassium chloride, 2 mM DTT, 0.1 mM EDTA, 0.001 % sodium azide90% H2O/10% D2O100 mM KCl mM6.5AMBIENT ATM atm290Bruker AVANCE III 600
112D-HBCBCGCDHD1 mM [U-100% 13C; U-100% 15N] SUMO1 K39Ac, 10 mM potassium phosphate, 100 mM potassium chloride, 2 mM DTT, 0.1 mM EDTA, 0.001 % sodium azide90% H2O/10% D2O100 mM KCl mM6.5AMBIENT ATM atm290Bruker AVANCE III 600
122D-HBCBCGCDCEHE1 mM [U-100% 13C; U-100% 15N] SUMO1 K39Ac, 10 mM potassium phosphate, 100 mM potassium chloride, 2 mM DTT, 0.1 mM EDTA, 0.001 % sodium azide90% H2O/10% D2O100 mM KCl mM6.5AMBIENT ATM atm290Bruker AVANCE III 600
133D 1H-15N TOCSY1 mM [U-100% 13C; U-100% 15N] SUMO1 K39Ac, 10 mM potassium phosphate, 100 mM potassium chloride, 2 mM DTT, 0.1 mM EDTA, 0.001 % sodium azide90% H2O/10% D2O100 mM KCl mM6.5AMBIENT ATM atm290Bruker AVANCE III 600
142D 1H-1H NOESY1 mM SUMO1 K39Ac, 10 mM potassium phosphate, 100 mM potassium chloride, 2 mM DTT, 0.1 mM EDTA, 0.001 % sodium azide90% H2O/10% D2O100 mM KCl mM6.5AMBIENT ATM atm290Bruker AVANCE III 850
153D 1H-15N NOESY1 mM [U-100% 13C; U-100% 15N] SUMO1 K39Ac, 10 mM potassium phosphate, 100 mM potassium chloride, 2 mM DTT, 0.1 mM EDTA, 0.001 % sodium azide90% H2O/10% D2O100 mM KCl mM6.5AMBIENT ATM atm290Bruker AVANCE 800
163D 1H-13C NOESY1 mM [U-100% 13C; U-100% 15N] SUMO1 K39Ac, 10 mM potassium phosphate, 100 mM potassium chloride, 2 mM DTT, 0.1 mM EDTA, 0.001 % sodium azide90% H2O/10% D2O100 mM KCl mM6.5AMBIENT ATM atm290Bruker AVANCE 800
172D 1H-15N HSQC IPAP1 mM [U-100% 15N] SUMO1 K39Ac, 10 mM potassium phosphate, 100 mM potassium chloride, 2 mM DTT, 0.1 mM EDTA, 0.001 % sodium azide, 10 mg/mL Pf1 phage90% H2O/10% D2O100 mM KCl mM6.5AMBIENT ATM atm290Bruker AVANCE III 600
182D NOESY F1 FILTERED1 mM [U-100% 13C; U-100% 15N] SUMO1 K39Ac, 10 mM potassium phosphate, 100 mM potassium chloride, 2 mM DTT, 0.1 mM EDTA, 0.001 % sodium azide90% H2O/10% D2O100 mM KCl mM6.5AMBIENT ATM atm290Bruker AVANCE III 850
192D NOESY F2 FILTERED1 mM [U-100% 13C; U-100% 15N] SUMO1 K39Ac, 10 mM potassium phosphate, 100 mM potassium chloride, 2 mM DTT, 0.1 mM EDTA, 0.001 % sodium azide90% H2O/10% D2O100 mM KCl mM6.5AMBIENT ATM atm290Bruker AVANCE III 850
202D NOESY F1/F2 FILTERED1 mM [U-100% 13C; U-100% 15N] SUMO1 K39Ac, 10 mM potassium phosphate, 100 mM potassium chloride, 2 mM DTT, 0.1 mM EDTA, 0.001 % sodium azide90% H2O/10% D2O100 mM KCl mM6.5AMBIENT ATM atm290Bruker AVANCE III 850
212D TOCSY F1/F2 FILTERED1 mM [U-100% 13C; U-100% 15N] SUMO1 K39Ac, 10 mM potassium phosphate, 100 mM potassium chloride, 2 mM DTT, 0.1 mM EDTA, 0.001 % sodium azide90% H2O/10% D2O100 mM KCl mM6.5AMBIENT ATM atm290Bruker AVANCE III 850
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE500
2BrukerAVANCE III600
3BrukerAVANCE800
4BrukerAVANCE III850
NMR Refinement
MethodDetailsSoftware
TORSION ANGLE DYNAMICS, DGSA- DISTANCE GEOMETRY SIMULATED ANNEALINGINITIAL STRUCTURE ENSEMBLE WAS CALCULATED BY SEMI-AUTOMATED NOESY ASSIGNMENT BY CYANA. THE ASSIGNMENTS WERE MANUALLY VERIFIED IN SPARKY AND FINAL STRUCTURE ANNEALING WAS PERFORMED IN CYANA.STRUCTURE AND RESTRAINTS FROM CYANA WERE IMPORTED IN XPLOR-NIH FOR EXPLICIT WATER REFINEMENT., INITIAL STRUCTURE ENSEMBLE WAS CALCULATED BY SEMI-AUTOMATED NOESY ASSIGNMENT BY CYANA. THE ASSIGNMENTS WERE MANUALLY VERIFIED IN SPARKY AND FINAL STRUCTURE ANNEALING WAS PERFORMED IN CYANA.STRUCTURE AND RESTRAINTS FROM CYANA WERE IMPORTED IN XPLOR- NIH FOR EXPLICIT WATER REFINEMENT.X-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number400
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsNMR DATA WAS ACQUIRED AT 295K USING SHIGEMI NMR TUBES.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementX-PLOR NIH2.34Schwieters, Kuszewski, Tjandra and Clore
2structure calculationCYANAGuntert, Mumenthaler and Wuthrich
3processingTopSpin3.2Bruker Biospin
4data analysisSparky3.113Goddard