☰ Navigation Tabs
Crystal structure of human CYP3A4 bound to metformin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UA1 PDB ENTRY 3UA1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 12% PEG 3350, 0.1M SODIUM ACETATE PH 7.0
Crystal Properties Matthews coefficient Solvent content 2.27 45.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77 α = 90 b = 101.07 β = 90 c = 128.37 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 CCD ADSC CCD MIRRORS 2012-12-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 44.31 98.2 0.07 10.5 4.4 15443 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.72 99.6 0.56 2 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3UA1 2.6 37.4 14657 770 97.71 0.20608 0.20227 0.21 0.27942 0.2859 RANDOM 71.742
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.16 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.028 r_dihedral_angle_3_deg 19.393 r_dihedral_angle_4_deg 15.329 r_dihedral_angle_1_deg 5.847 r_mcangle_it 5.026 r_scbond_it 3.606 r_mcbond_it 3.233 r_angle_refined_deg 1.472 r_chiral_restr 0.102 r_bond_refined_d 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.028 r_dihedral_angle_3_deg 19.393 r_dihedral_angle_4_deg 15.329 r_dihedral_angle_1_deg 5.847 r_mcangle_it 5.026 r_scbond_it 3.606 r_mcbond_it 3.233 r_angle_refined_deg 1.472 r_chiral_restr 0.102 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3639 Nucleic Acid Atoms Solvent Atoms 26 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALEPACK data scaling PHASER phasing