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The structure of the L-tryptophan oxidase VioA from Chromobacterium violaceum - Samarium derivative
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 277 0.08 M TRIS PH 8.5, 24 %(W/V) PEG 4000, 0.16 M MGCL2, 20 %(V/V) GLYCEROL AT 277 K THEN SOAKED WITH 0.01 M HGCL2 AND 0.01 M SM(NO3)3
Crystal Properties Matthews coefficient Solvent content 2.25 45.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.88 α = 90 b = 87.07 β = 112.95 c = 78.02 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F TOROIDAL FOCUSING MIRRORS 2013-08-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.08 19.92 98 0.11 26.34 24.4 49742 -3 23.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.08 2.15 91 0.51 6.61 19.6
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD NONE 2.076 19.984 1.34 49741 4879 98.39 0.166 0.1648 0.1849 0.1881 0.1995 23.74
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.81 f_angle_d 0.595 f_chiral_restr 0.041 f_bond_d 0.003 f_plane_restr 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6333 Nucleic Acid Atoms Solvent Atoms 383 Heterogen Atoms 168
Software Software Software Name Purpose PHENIX refinement XDS data reduction XSCALE data scaling SHELXCDE phasing